Gene detail

Detail information of GWHGAAZE016456

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282892.1	0	PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Vitis vinifera]
Swissprot	tr\|Q7XTV7\|HIP1_ORYSJ	8E-79	Probable E3 ubiquitin-protein ligase HIP1
trEMBL	tr\|F6H1B8\|F6H1B8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45827.1}
TAIR10	AT1G45180.1	6E-82	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	76949402	76956394	+
GWHAAZE00000004	mRNA	76949402	76956394	+
GWHAAZE00000004	exon	76949402	76950429	+
GWHAAZE00000004	exon	76950526	76951081	+
GWHAAZE00000004	exon	76952526	76952579	+
GWHAAZE00000004	exon	76954203	76954301	+
GWHAAZE00000004	exon	76954419	76954559	+
GWHAAZE00000004	exon	76956263	76956394	+
GWHAAZE00000004	CDS	76949402	76950429	+
GWHAAZE00000004	CDS	76950526	76951081	+
GWHAAZE00000004	CDS	76952526	76952579	+
GWHAAZE00000004	CDS	76954203	76954301	+
GWHAAZE00000004	CDS	76954419	76954559	+
GWHAAZE00000004	CDS	76956263	76956394	+

Transcript Sequence
>GWHTAAZE016476 ATGCAGGGGCATAGGAGTGCTATTGGTTCCTTGCCAGAAACCTTAGGCTTTGATCACGGATCTACATCAAATGATGCAGTTATAGACCAACAGATTTGCTGGACTAACAATATGAGGAATAATGCACAAAACCGTGTATCAGATTATATCTCACCAAGCGATACAAATGTTACATATATGAATACCGCAAGTCAAGAAGGGCAGAATCTAAGCGGATGGAATATAGGGGAGCCCAGTTCAAGTGGTACACAAAATGATGCCAGTCGTAATGAGGGAAAAATAGAACATAATTGGTTGTCTTCTATGGATGATTGTACTAGAGCTGGTCAAATCTTCGAAGAACGACAATATGAACTATCAAACACTCTTTCGCTAAACAATGCCAATGTAAACGTAAGTAACGACCAGATTGGCCATGGGTCTGTGTTTTTACGGAGTTGTACTTCAGATTCTGTTCCTCAGGATCTTAATGTAAGCTCGGGATTTGTGGGACCCCGTGTCGAAGATTCTCAAGGTATGGAAATTCTTAATCCATACAAGGCTAGTTCGTCCGGGAACTTGCCTGACCCATCCCCAAATAGCATGCCTGATTCTTTTGGGGGTGTGTCTGGAAGTGGTGGATATTTGGTGGAGGAAAATGAGGGTCGTCGGTTATCTTGTAAAAGAAAAGCACTTGAGGGAAATGTTGGGCAATCTTCTGGAAGTGAAAGCTCAAACTATTTTCACCGTGGAGAAAGTGTTTGGCGTCCTGGTTATGCTGGCCGTAACGGGAATAGAAGCTTAAGCATATCATCATCTCCTTCAGAGAACAGTCCTCGCGTGGAGGTAAACCCGAGACTTGGACTAGCTGTTGGAGGAGTTGCTTCTGAAACCCGCCCTAGTGCTTTAAATGCTGCACAAAGTGTAGAAAGCTCTCGTAGAAATTTCCGTTTGAGGATTAATGCTTCAAATCAACAAGATTCTATACCCACTAATATGTTTTCTACAGGGAGTGCTGTTGGTCATTCTAATCTTTCAAATCCCCACTTAAGAAATCTTCCATCATCGAGGTGGAACAGAGGTTCTAGCTCGAGATCCAGCGCTTCAAGTGGTGCATTTCCCGATGCTGCGGCCTACGAGGAACCTAACTCAAGAACGGTTCCAAGAAACATTTCGGATCATCCCATGTTTGTACCTTTGGCTCAAAATGTTGTAAACATGAGTTTTAATAATGGTGGGAATTTAAGCATAAATGGAAGTGGTGCTTCCACTTCTCGAGCTGGCTCGAGTTCTAGTGTCCATCCATCATCGGCTTCTAATTGGATCCCACATCGCCACCCGTCGCACTATCCGAGGAGACTGACGGAGCTAGTCCGTCGGTCTTTGATGGCCTCCACTGCATCCGAGTCAGGAGGGCAGAACAGTAATTTTCCTTCATCGTCCTCGCAAGAGTTGCCTCTTTCATCTGGGGAACAGGGGCGCCATGTTTCACACTCGAGATCGGCTATGTTGTTGGATAGGCAACTTGAAGGTGCTTTTGGAATTCCTTATTCAATGCGAACTTTGGCTGCTGCAGGTGAAGGAAGAAGCAGGCTTGTTTCAGAGCATATTCGCAATGTCTTGGATATTATGCGTAGGGGCGAGGGCTTGCGATTTGAGGATGTAATGATCCTTGATCAATCTGTCTTCTTTGGGATGGGTGATATTCATGATCGGCATAGGGATATGCGGCTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTAAACACTGGGTTGAGTGAGGAGACCATTTCAACTCGTCTCAAGCAGAGGAAGTATGTGTGCGTTACAACAGGTCAGTTCGAAAGTGAACCATGCTGCATATGCCAGGAGGAATATAATAATGGCGAAGATCTTGGGAAGTTGGAGTGTGGGCATGATTTCCACTCGGAGTGTATCAAACAATGGCTAATGCGCAAGAATTTGTGCCCCATTTGCAAAACGACAGGCCTAAAGACTTGA

Network for GWHGAAZE016456

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	622	663	3.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.295
	SRR3591706	second leaf	18.733
	SRR3591707	mature leaf	20.593
	SRR3591708	Shoot apex	28.329
	SRR3591709	Stem	43.052
	SRR3591710	White floral bud	72.625
	SRR3591711	White flower	84.444
	SRR3591712	Green floral bud	40.108
	SRR3591713	Yellow flower	79.344
SRP173429	SRR8316895	Juvenile bud stage	18.454
	SRR8316896	Juvenile bud stage	26.687
	SRR8316897	Juvenile bud stage	11.308
	SRR8316894	Third green stage	11.507
	SRR8316900	Third green stage	30.668
	SRR8316901	Third green stage	28.688
	SRR8316898	Complete white stage	20.350
	SRR8316899	Complete white stage	41.387
	SRR8316903	Complete white stage	42.096
	SRR8316902	Silver flowering stage	28.175
	SRR8316904	Silver flowering stage	34.303
	SRR8316905	Silver flowering stage	14.375
	SRR8316906	Gold flowering stage	58.602
	SRR8316907	Gold flowering stage	55.313
	SRR8316908	Gold flowering stage	65.626
SRP132670	SRR6706286	Control	27.211
	SRR6706287	Light intensity 50%	28.979
	SRR6706288	Light intensity 20%	29.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.118
	CNS0095593	Slightly white alabastrum(diploid) 2	16.059
	CNS0095594	Slightly white alabastrum(diploid) 3	21.446
	CNS0095595	Whole white alabastrum(diploid) 2	17.864
	CNS0095596	Whole white alabastrum(diploid) 3	14.720
	CNS0095597	Whole white alabastrum(diploid) 4	18.940
	CNS0095598	Silvery flower (diploied) 1	31.168
	CNS0095599	Silvery flower (diploied) 2	23.745
	CNS0095600	Silvery flower (diploied) 3	55.138
	CNS0095601	Golden flower (diploid) 1	24.097
	CNS0095602	Golden flower (diploid) 2	53.772
	CNS0095603	Golden flower (diploid) 3	50.544
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.917
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.521
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.431
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.239
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.830
	CNS0095610	Silvery flower (tetraploid) 1	58.215
	CNS0095611	Silvery flower (tetraploid) 2	52.265
	CNS0095612	Silvery flower (tetraploid) 3	79.663
	CNS0095613	Golden flower (tetraploid) 1	41.532
	CNS0095614	Golden flower (tetraploid) 2	51.779
	CNS0095615	Golden flower (tetraploid) 3	52.531
CRA001975	CRR073297	Stem 1	28.478
	CRR073298	Stem 2	30.044
	CRR073299	Stem 3	28.812
	CRR073300	Leaf 1	33.732
	CRR073301	Leaf 2	32.242
	CRR073302	Leaf 3	24.834
	CRR073303	Juvenile bud 1	26.061
	CRR073304	Juvenile bud 2	27.805
	CRR073305	Juvenile bud 3	29.492
	CRR073306	Third green 1	34.905
	CRR073307	Third green 2	25.799
	CRR073308	Third green 3	32.438
	CRR073309	Second white 1	36.577
	CRR073310	Second white 2	43.923
	CRR073311	Second white 3	47.846
	CRR073312	Silver flowering 1	44.399
	CRR073313	Silver flowering 2	34.216
	CRR073314	Silver flowering 3	36.513
	CRR073315	Gold flowering 1	21.213
	CRR073316	Gold flowering 2	29.019
	CRR073317	Gold flowering 3	21.593
	CRR073318	Tawny withering 1	41.464
	CRR073319	Tawny withering 2	41.005
	CRR073320	Tawny withering 3	38.978