Gene detail

Detail information of GWHGAAZE016466

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011017186.1	8.0208E-133	PREDICTED: heat stress transcription factor B-4-like [Populus euphratica]
Swissprot	tr\|Q9C635\|HSFB4_ARATH	9E-104	Heat stress transcription factor B-4
trEMBL	tr\|B9GNU9\|B9GNU9_POPTR	7E-131	Uncharacterized protein {ECO:0000313\|EMBL:EEE80449.2}
TAIR10	AT1G46264.1	4E-78	heat shock transcription factor B4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	77101812	77103384	+
GWHAAZE00000004	mRNA	77101812	77103384	+
GWHAAZE00000004	exon	77101812	77102143	+
GWHAAZE00000004	exon	77102629	77103384	+
GWHAAZE00000004	five_prime_UTR	77101812	77101840	+
GWHAAZE00000004	CDS	77101841	77102143	+
GWHAAZE00000004	CDS	77102629	77103384	+

Transcript Sequence
>GWHTAAZE016486 CAACACACAAATCTCCCAATATTAAGCAAAGAAGAAGAAGAAGAAGAGTTTGTTTAATTTTCTTCGACATAAAATATATGGCTTTGATGTTAGATAATAGGTGTGAAGAAGGGTTATTACTATCACTAGACTCCAACAAATCAGTACCAGCACCATTCCTCACAAAAACATATCAACTAGTTGACGATCCAACCACTGACCACATAGTCTCTTGGGGTGAAGACCACTCTACCTTCATCGTCTGGCGCCCACCCGATTTCGCGCGCGACCTCCTCCCTAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAACTCAACACTTACGGTTTTAGGAAGATTGTACCAGACAGATGGGAGTTTGCAAACGAGTTCTTCAAAAAAGGAGAAAAACATCTGCTATGCGAAATCCACCGCAGAAAGACATCTCATCCGCAAGTATCACTCAATCACCACCACTCATCAATCGGATCTGGGCCCACGGGTTTTTACACGTTCCCGAGCCGGGCCAGCATCTCACCTCATGGCTCGGACAATCAATCAAGTTATTGGTGTGACTCGCCACCACCAGATTTCTGCTCACCACCATCCACGCGTATTACTAACCCTGCCGGAATCTCCATCTTCAATAGCAGCGCGGCCTATAATGTGGCTGCACTGGCTGAGGATAACGAGAGACTCCGGCGGAGCAACAATATGTTAATGTCTGAACTTGCTCACATGAGGAAGTTGTACAATGATATTATTTACTTCGTACAGAATCACGTCCAGCCAGTTGCCGCGCGTAGTAATACTGATAAAATCAGTAATGGCCCATTTATGGGACAAAAGGGTTTTTCAGATAAGATATTTGTGCACCATTTGAATAGCCAGAAACAAGAATTTCCTCGCGGTAATGGATTGAAATGTACGAGTAATACTACTACTTCGGGGAGTAGTTTGACAGTAGTAAATGAAGAGGGGAACAATGGTGGTAAGTGTAGTAACGGAATGAAGCTATTTGGAGTGCCAATTTTGTCTAAGAAGGCAAGAGTGGCTAACGATGATTTAGGGTTGAATCTCATGCCGCCTTCTCAATATTAG

Network for GWHGAAZE016466

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00447.18	HSF_DNA-bind	43	132	1.80E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.095
	SRR3591706	second leaf	1.825
	SRR3591707	mature leaf	0.519
	SRR3591708	Shoot apex	18.270
	SRR3591709	Stem	14.806
	SRR3591710	White floral bud	2.922
	SRR3591711	White flower	2.779
	SRR3591712	Green floral bud	2.759
	SRR3591713	Yellow flower	1.197
SRP173429	SRR8316895	Juvenile bud stage	1.665
	SRR8316896	Juvenile bud stage	0.562
	SRR8316897	Juvenile bud stage	0.296
	SRR8316894	Third green stage	0.797
	SRR8316900	Third green stage	1.120
	SRR8316901	Third green stage	0.866
	SRR8316898	Complete white stage	1.047
	SRR8316899	Complete white stage	2.109
	SRR8316903	Complete white stage	1.787
	SRR8316902	Silver flowering stage	2.486
	SRR8316904	Silver flowering stage	1.327
	SRR8316905	Silver flowering stage	0.200
	SRR8316906	Gold flowering stage	0.345
	SRR8316907	Gold flowering stage	2.500
	SRR8316908	Gold flowering stage	0.813
SRP132670	SRR6706286	Control	1.347
	SRR6706287	Light intensity 50%	0.965
	SRR6706288	Light intensity 20%	0.838
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.312
	CNS0095593	Slightly white alabastrum(diploid) 2	2.241
	CNS0095594	Slightly white alabastrum(diploid) 3	0.560
	CNS0095595	Whole white alabastrum(diploid) 2	0.668
	CNS0095596	Whole white alabastrum(diploid) 3	1.334
	CNS0095597	Whole white alabastrum(diploid) 4	0.882
	CNS0095598	Silvery flower (diploied) 1	0.875
	CNS0095599	Silvery flower (diploied) 2	2.361
	CNS0095600	Silvery flower (diploied) 3	3.153
	CNS0095601	Golden flower (diploid) 1	0.189
	CNS0095602	Golden flower (diploid) 2	0.907
	CNS0095603	Golden flower (diploid) 3	0.307
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.533
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.534
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.800
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.433
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.208
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.630
	CNS0095610	Silvery flower (tetraploid) 1	2.264
	CNS0095611	Silvery flower (tetraploid) 2	0.684
	CNS0095612	Silvery flower (tetraploid) 3	1.665
	CNS0095613	Golden flower (tetraploid) 1	0.024
	CNS0095614	Golden flower (tetraploid) 2	0.181
	CNS0095615	Golden flower (tetraploid) 3	1.235
CRA001975	CRR073297	Stem 1	2.638
	CRR073298	Stem 2	2.549
	CRR073299	Stem 3	4.294
	CRR073300	Leaf 1	1.070
	CRR073301	Leaf 2	3.375
	CRR073302	Leaf 3	2.216
	CRR073303	Juvenile bud 1	1.177
	CRR073304	Juvenile bud 2	1.256
	CRR073305	Juvenile bud 3	3.223
	CRR073306	Third green 1	0.416
	CRR073307	Third green 2	0.646
	CRR073308	Third green 3	0.678
	CRR073309	Second white 1	0.049
	CRR073310	Second white 2	0.363
	CRR073311	Second white 3	0.192
	CRR073312	Silver flowering 1	0.131
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.913
	CRR073316	Gold flowering 2	0.290
	CRR073317	Gold flowering 3	0.630
	CRR073318	Tawny withering 1	15.713
	CRR073319	Tawny withering 2	3.083
	CRR073320	Tawny withering 3	12.274