Gene detail

Detail information of GWHGAAZE016520

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804514.1	0	PREDICTED: myosin heavy chain kinase B-like [Nicotiana sylvestris]
Swissprot	tr\|Q9FE91\|C3H62_ARATH	5E-14	Zinc finger CCCH domain-containing protein 62
trEMBL	tr\|A0A068UGI7\|A0A068UGI7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07591.1}
TAIR10	AT2G26490.1	7E-172	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78119526	78120995	-
GWHAAZE00000004	mRNA	78119526	78120995	-
GWHAAZE00000004	exon	78120366	78120995	-
GWHAAZE00000004	exon	78119526	78120140	-
GWHAAZE00000004	CDS	78120366	78120995	-
GWHAAZE00000004	CDS	78119526	78120140	-

Transcript Sequence
>GWHTAAZE016540 ATGGTGCATTCGGACCCAAACTTATCATCGACGGCCAGCGACGATGATTACGCTACCCGCCAGAGCAGCGTATCCGCCTACGATCCCAACCGCCTAAGCGGCGAGGGGTCACCGATGATGATGTCGCCCTGGAACCAAGCCTGTCCTTTCACAAAATCACAAAACTCTCAAATCGACACCAACATTTCCCAAAACGGTCTCATCGGATCACTTGTCCGAGAAGAAGGACACATTTACTCCCTCGCTGCCACCGGTGATCTTTTATACACCGGCTCTGACAGCAAAAACATTCGCGTTTGGAAAAACATGAAGGAATTTTCGGCATTTAAGTCGAATAGTGGGTTGGTTAAAGCCATAATAATCTCGGGTGAGAAGATTTTTACGGGTCACCAGGACGGTAAGGTCCGGGTGTGGAAGGTGAATCAGAAAAACCCGAGTAATCATAAAAGGATTGGGACTTTGCCAACGTTTTTTCATATTCTAAAGTGCTCGATTAAACCTAGCAATTATGTTGAGGTGAAGCGAAATAAATCTTCTATCTGGATCAAACACTGTGATGCAATTTCTTGTTTGAGCATGGATGAAGGACAAGGGCTTTTATATTCTGCTTCGTGGGACAGGACATTTAAGGTGTGGAGAGTGGAGAACTCGAAATGCGTTGAATCCGTGAAATCCCACGACGACGCGGTCAACTCCGTCGTCGTCACCGGCGACGGGATGGTGTTCACCGGATCGGCCGATGGTACGGTGAAGGTCTGGAAGAGAGAGGGACACGGAAAATCCATAAAGCATGAATTTGTGCAGACTCTGTTGAAGCAAGAGTGTGCTGTTACCGCTTTGGCCTTAAGCGGGTCGGGTACGGTTCTCTATTGCGGATCCTCCGATGGGTTGGTGAATTTTTGGGAACGTGAGAAGCAATTGTCCCACGGTGGGGTCCTCAAGGGTCACAAATTGGCGGTTCTTTGCCTTGCTGCTGCAGGGAATATGATGTTCAGCGGTTCAGCGGATAAAACCATTTGTGTGTGGAGGAGGGAGGGTACCGTCCACTCCTGCATATCTGTCTTGACCGGTCATACCGGGCCGGTCAAGTGCCTCGCCGTCGAGAAGGACCAGGAATCAACGGCGGGAGATCAACGGTGGACCGTTTACAGCGGTAGCCTCGATAAGTCTGTTAAGGTGTGGAGCGTATCGGAGATGTTGCCGGAAAATGCGGATTGGGCCTCTATCCCTTCCGGACGTTATTGA

Network for GWHGAAZE016520

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	75	101	0.07
PF00400.33	WD40	181	212	0.04
PF00400.33	WD40	218	254	0.00025
PF00400.33	WD40	275	301	0.055
PF00400.33	WD40	311	342	0.0099
PF00400.33	WD40	350	395	3.00E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.839
	SRR3591706	second leaf	0.007
	SRR3591707	mature leaf	0.245
	SRR3591708	Shoot apex	0.311
	SRR3591709	Stem	0.845
	SRR3591710	White floral bud	121.221
	SRR3591711	White flower	13.999
	SRR3591712	Green floral bud	88.354
	SRR3591713	Yellow flower	5.972
SRP173429	SRR8316895	Juvenile bud stage	7.069
	SRR8316896	Juvenile bud stage	8.295
	SRR8316897	Juvenile bud stage	3.984
	SRR8316894	Third green stage	4.341
	SRR8316900	Third green stage	39.289
	SRR8316901	Third green stage	33.665
	SRR8316898	Complete white stage	0.484
	SRR8316899	Complete white stage	20.353
	SRR8316903	Complete white stage	1.961
	SRR8316902	Silver flowering stage	1.586
	SRR8316904	Silver flowering stage	3.650
	SRR8316905	Silver flowering stage	1.088
	SRR8316906	Gold flowering stage	0.534
	SRR8316907	Gold flowering stage	0.172
	SRR8316908	Gold flowering stage	0.291
SRP132670	SRR6706286	Control	34.763
	SRR6706287	Light intensity 50%	40.659
	SRR6706288	Light intensity 20%	36.597
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.165
	CNS0095593	Slightly white alabastrum(diploid) 2	6.714
	CNS0095594	Slightly white alabastrum(diploid) 3	7.760
	CNS0095595	Whole white alabastrum(diploid) 2	67.226
	CNS0095596	Whole white alabastrum(diploid) 3	81.570
	CNS0095597	Whole white alabastrum(diploid) 4	117.213
	CNS0095598	Silvery flower (diploied) 1	11.700
	CNS0095599	Silvery flower (diploied) 2	26.504
	CNS0095600	Silvery flower (diploied) 3	7.467
	CNS0095601	Golden flower (diploid) 1	14.041
	CNS0095602	Golden flower (diploid) 2	10.632
	CNS0095603	Golden flower (diploid) 3	11.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.681
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.809
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.709
	CNS0095607	Whole white alabastrum(tetraploid) 1	90.945
	CNS0095608	Whole white alabastrum(tetraploid) 2	133.759
	CNS0095609	Whole white alabastrum(tetraploid) 3	72.123
	CNS0095610	Silvery flower (tetraploid) 1	4.165
	CNS0095611	Silvery flower (tetraploid) 2	21.550
	CNS0095612	Silvery flower (tetraploid) 3	39.123
	CNS0095613	Golden flower (tetraploid) 1	8.668
	CNS0095614	Golden flower (tetraploid) 2	1.710
	CNS0095615	Golden flower (tetraploid) 3	18.073
CRA001975	CRR073297	Stem 1	12.386
	CRR073298	Stem 2	11.023
	CRR073299	Stem 3	12.778
	CRR073300	Leaf 1	54.391
	CRR073301	Leaf 2	37.312
	CRR073302	Leaf 3	30.977
	CRR073303	Juvenile bud 1	118.495
	CRR073304	Juvenile bud 2	88.875
	CRR073305	Juvenile bud 3	36.423
	CRR073306	Third green 1	39.424
	CRR073307	Third green 2	57.580
	CRR073308	Third green 3	46.351
	CRR073309	Second white 1	2.873
	CRR073310	Second white 2	8.758
	CRR073311	Second white 3	8.908
	CRR073312	Silver flowering 1	41.060
	CRR073313	Silver flowering 2	41.151
	CRR073314	Silver flowering 3	24.875
	CRR073315	Gold flowering 1	59.186
	CRR073316	Gold flowering 2	17.999
	CRR073317	Gold flowering 3	22.879
	CRR073318	Tawny withering 1	44.900
	CRR073319	Tawny withering 2	42.469
	CRR073320	Tawny withering 3	39.761