Gene detail

Detail information of GWHGAAZE016521

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07589.1	2.4344E-161	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8RY67\|WAKLO_ARATH	3E-82	Wall-associated receptor kinase-like 14 (Precursor)
trEMBL	tr\|A0A068UHA9\|A0A068UHA9_COFCA	9E-162	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07589.1}
TAIR10	AT2G23450.2	2E-73	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78152601	78157391	+
GWHAAZE00000004	mRNA	78152601	78157391	+
GWHAAZE00000004	exon	78152601	78153031	+
GWHAAZE00000004	exon	78153259	78153602	+
GWHAAZE00000004	exon	78155455	78155532	+
GWHAAZE00000004	exon	78156142	78156538	+
GWHAAZE00000004	exon	78156971	78157391	+
GWHAAZE00000004	CDS	78152601	78153031	+
GWHAAZE00000004	CDS	78153259	78153602	+
GWHAAZE00000004	CDS	78155455	78155532	+
GWHAAZE00000004	CDS	78156142	78156538	+
GWHAAZE00000004	CDS	78156971	78157391	+

Transcript Sequence
>GWHTAAZE016541 ATGTTGAAAATCAAAATTACCATATTCGTCTGTATTCTTTGTTTCCTTCAATCAATCGAAGCCCAAAGATCAGCAAACTGTATACGATCATGTGGGCAACACCAAGTAAAGAACCTTCCGTCGCCGTTTGGGTTCTCCGGTGACTGTCAAATCCCCCTGAATTGCTCTGGCGCCGGCGAAATATTTATCAATGAATTCAAGGTCCGATCATTCTCCTCCGACAACATCATGGTCAACCTTCCGGCGAGTTGCGGCCGGCCGATCAATTCCCTCAGGCGACTCTTCGGCCGGAACTACGCTCCAACGACCCACAACGGGATTCTCCTCCAGAACTGCACCTCGCCGGTGACAGTGTGTTTAATTCCAACAACTATGATCCAAACCCGGTTTGAGAATACAGATTGTGAACAATGGCGTAACCAGGAAATTTGCTACGGCCCTGATTGTGGGTCAAAGAATAATAATTCAATTAGCTGTTACTCGGAGCAGAATAAGACGAATTTATTTATGGATTATTTGAATTTGATGAGGAGTGGGTGTGAATCGTTATTTTCTGCGATTTCGACATTTTCGTTAGGTAATAGTTCAGCAGTGAGTTTAAACGTTGAGGTGGTTCAGTTGGAGTGGTGGATTGAGGGGAATTGTGAGAATTGTTCCAACTATGCCACGTGTGTTCGGATTGTGGCGCCGTTCAACGGGACGGACGGGTATCGTTGCCGGTGCTTAAGTGGATTCGTCGGCGATGGGTACAGAGGTGGCTCCGGTTGCCAAAAAGAGTCTTCGTCATGCAATCCTTCAAAGTTCTTGTCTGGACGTTGTGGTGGTACAACTAGAGTTGGTGTTTTAATTGGAGGTATCTCAGTTGGAGCTTCTCTAATAATCGGCATAGCTCTAATTTGCTGTTTTATTCGAAAGCGAGCCATTTCAAAAACCAAAAGCAAAACCAAACGACAATTATCCGAAGCCATAGGCATCGACATTGCCATCTACCCATACAAAGAAATAGAAAAAGCCACAAGCAATTTTTCGGAAAAACAACGCCTAGGAACCGGGGCCTATGGAACCGTGTACTCGGGAAAACTCCACAACGATAAATGGGTTGCCATTAAAAGAATCAAACACAGAGCCAACACAGATAATATCGAACAAGTCATTAATGAAATCAAGCTAATATCCTCTGTAAACCACCCGAATCTAGTTCGCCTTTTGGGTTGCTCGATTGACAAAGGCGAACAAGTTCTTATTTACGAGATTGGAAAGGGGCTTTTGGATACGATAATTGACCCGTTCTTTGAGTCAAACAAAGATATTTGGACAGTTTCATCTTTACACAAGGTGGCCGAGCTTGCTTTTAGGTGCCTTGCTTTTCAAAGCGATGCGAGGCCTTCGATGGTGGAAGTGGCGGTAGAGCTAGAACAAATTATGCTTAGTAAATGGGCATCATTTTCAAGTGAAACAGTTGCGAATTCTTTAGGGGTATCTTCTTGCACTTCATTATCTGATGAATGCAATAAATCGTTGGATTTGACTGTTGATAAGTGCGAATTGTTTGGTAGTGTGAAGTCGATGGAAAGTATGAAGGACTTATCACTTGTTTCTGTTGACAATTTGTGGCCAAGTGACGAAAGTTCGCCCTCCTCGAATAGTTTGCTCAATCATGTAATTCACTAA

Network for GWHGAAZE016521

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	342	428	4.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_WAK_LRK10L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.664
	SRR3591706	second leaf	0.092
	SRR3591707	mature leaf	3.409
	SRR3591708	Shoot apex	0.117
	SRR3591709	Stem	4.003
	SRR3591710	White floral bud	0.718
	SRR3591711	White flower	1.389
	SRR3591712	Green floral bud	0.268
	SRR3591713	Yellow flower	0.861
SRP173429	SRR8316895	Juvenile bud stage	0.341
	SRR8316896	Juvenile bud stage	0.263
	SRR8316897	Juvenile bud stage	0.057
	SRR8316894	Third green stage	0.076
	SRR8316900	Third green stage	0.157
	SRR8316901	Third green stage	0.086
	SRR8316898	Complete white stage	0.063
	SRR8316899	Complete white stage	0.617
	SRR8316903	Complete white stage	0.156
	SRR8316902	Silver flowering stage	0.127
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.077
	SRR8316906	Gold flowering stage	0.119
	SRR8316907	Gold flowering stage	0.197
	SRR8316908	Gold flowering stage	0.342
SRP132670	SRR6706286	Control	0.444
	SRR6706287	Light intensity 50%	0.373
	SRR6706288	Light intensity 20%	0.306
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.289
	CNS0095593	Slightly white alabastrum(diploid) 2	0.333
	CNS0095594	Slightly white alabastrum(diploid) 3	0.265
	CNS0095595	Whole white alabastrum(diploid) 2	0.296
	CNS0095596	Whole white alabastrum(diploid) 3	0.011
	CNS0095597	Whole white alabastrum(diploid) 4	0.167
	CNS0095598	Silvery flower (diploied) 1	1.188
	CNS0095599	Silvery flower (diploied) 2	0.575
	CNS0095600	Silvery flower (diploied) 3	0.723
	CNS0095601	Golden flower (diploid) 1	1.141
	CNS0095602	Golden flower (diploid) 2	0.905
	CNS0095603	Golden flower (diploid) 3	1.219
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.241
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.044
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.380
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.074
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.201
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.036
	CNS0095610	Silvery flower (tetraploid) 1	0.438
	CNS0095611	Silvery flower (tetraploid) 2	0.418
	CNS0095612	Silvery flower (tetraploid) 3	0.365
	CNS0095613	Golden flower (tetraploid) 1	0.126
	CNS0095614	Golden flower (tetraploid) 2	0.534
	CNS0095615	Golden flower (tetraploid) 3	0.222
CRA001975	CRR073297	Stem 1	0.209
	CRR073298	Stem 2	0.148
	CRR073299	Stem 3	0.052
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.186
	CRR073302	Leaf 3	0.068
	CRR073303	Juvenile bud 1	0.301
	CRR073304	Juvenile bud 2	0.043
	CRR073305	Juvenile bud 3	0.280
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.098
	CRR073309	Second white 1	0.231
	CRR073310	Second white 2	0.061
	CRR073311	Second white 3	0.101
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.119
	CRR073315	Gold flowering 1	0.684
	CRR073316	Gold flowering 2	1.591
	CRR073317	Gold flowering 3	0.706
	CRR073318	Tawny withering 1	8.855
	CRR073319	Tawny withering 2	6.224
	CRR073320	Tawny withering 3	2.646