Gene detail

Detail information of GWHGAAZE016523

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHY03308.1	0	allene oxide synthase [Camellia sinensis]
Swissprot	tr\|P48417\|CP74_LINUS	0	Allene oxide synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A023UKW8\|A0A023UKW8_CAMSI	0	Allene oxide synthase {ECO:0000313\|EMBL:AHY03308.1}
TAIR10	AT5G42650.1	3E-171	allene oxide synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78197824	78199675	+
GWHAAZE00000004	mRNA	78197824	78199675	+
GWHAAZE00000004	exon	78197824	78198471	+
GWHAAZE00000004	exon	78198740	78199675	+
GWHAAZE00000004	CDS	78197824	78198471	+
GWHAAZE00000004	CDS	78198740	78199675	+

Transcript Sequence
>GWHTAAZE016543 ATGGCACTACCATTCTCCACACACTCCCTCCCTCATCTCCAACTCCACCATTCACTGCCAAGATCACCCAAACTACTCTCCCGCCGCCACGTCTCCCCTCCGATCACCGCCTCCATCTCCCAAAACACCAACATTCCACCATCCTCCACTACGGCACCACTACCAGGATCCGCCAGTACCACACTCCCTATCAAACCACTACCAGGCGACTACGGCCTCCCCTTCTTCGGCCCGATTCAAGACCGAAACGATTACTTCTACAACCAAGGCCGAGACGACTTCTTCAAATCTCGCGTTGAAAAGTACAAATCTACCGTCTTCAGAACCAACATGCCCCCGGGACCCTTCATTGCCTCGGATTCCAGAGTCATCGCTCTATTAGACGCCAAATGTTTCCCTGTACTATTCGACATGTCCAAGGTCGAAAAAAAGGACTTATTCACCGGTACATACAAGCCATCAAGTAATCTCACCGGTGGTTACAGGATCCTATCTTATCTCGATCCTGCTGAGCCGAGTCACGCCAAGTTGAAGCAGCTATTGTTCTTCTTACTCAAATCACGACGAGACAGAGTAATCCCCGAGTTTCGTAGTTGCTTTGCTGATGCGTTCAACAGTCTCGAGAGCGAATTGAAATCGAAAAAGAAGGTAAGTTTAAATGACGCCACCGATCAAGCGTCATTTAATTTTCTTGCACGCGCTCTGTGCGGGAAAAATCCGGTAACAACAGAACTCGGAACCGAAGGGCCCGCCTTGATTGAAAAATGGGTGGGGGTACAACTCGCGCCTGTACTTACACTTGGCCTCCCCAAGTTTATAGAGGATTTGTTAATCCGCACCTTTTCTCTTCCTTCATTTTTAGTGCAAAAGGATTACCAGAGACTTTACAATTTCTTCTATGAATCATCTACTTTTTTCCTCGACGAAGCCGAAAAAACTGGCGTATCCAGGGAGGAGGCTTGCCATAACCTCGTCTTCGCCACATGTTTCAATTCGTTCGGTGGGGTGAAGATTTTATTCCCGGGCATTATAAAATGGCTCGGATCGGCCGGACCTGAACTACACGCCCGATTAGCAAAAGAGATTAGATCTGCCGTGAAATCCACTGGCGGGAATATAACAATGGCAGTGCTGGAGCAGATGCCGGTGGCTCAGTCCGTAGTATATGAAACACTACGAATCGAGCCACCTGTAGCCTCCCAGTACGGGAGAGCTAAAAAGGACTTTGTGGTGGAATCTCACGATTCAGCATTTGAGATTAAGAAGGGGGAAATGTTGTTCGGGTACCAGCCTTTTGCGACGAAAGATGGGAGGATTTTTGAGAACTCCGAGGAATTTGTGGCGGATAGATTCGTTGGCGAAGGCGAGAAGTTGTTGAAGTACGTGTTGTGGTCAAATGGACCGGAGACGGATACGCCGGCCCTGGGGAATAAGCAGTGTGCTGGGAAGGATTTTGTGGTGTTGACCGCGAGGTTGTTTTTGACCGAGTTTTTCCTAAGGTATGATACGTTTGAGATTGAAGTTGGTGAGGCGGTGATTGGTTCAACGGTAACAGTAACGTCTCTGACAAAAGCCAGTTCTTGA

Network for GWHGAAZE016523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	352	503	2.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01723	AOS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004497	molecular_function	monooxygenase activity
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.892
	SRR3591706	second leaf	34.875
	SRR3591707	mature leaf	179.947
	SRR3591708	Shoot apex	11.564
	SRR3591709	Stem	21.485
	SRR3591710	White floral bud	665.044
	SRR3591711	White flower	214.848
	SRR3591712	Green floral bud	133.698
	SRR3591713	Yellow flower	223.522
SRP173429	SRR8316895	Juvenile bud stage	23.065
	SRR8316896	Juvenile bud stage	51.101
	SRR8316897	Juvenile bud stage	28.800
	SRR8316894	Third green stage	22.633
	SRR8316900	Third green stage	66.245
	SRR8316901	Third green stage	85.843
	SRR8316898	Complete white stage	243.785
	SRR8316899	Complete white stage	171.036
	SRR8316903	Complete white stage	449.881
	SRR8316902	Silver flowering stage	122.626
	SRR8316904	Silver flowering stage	239.536
	SRR8316905	Silver flowering stage	143.924
	SRR8316906	Gold flowering stage	119.469
	SRR8316907	Gold flowering stage	294.610
	SRR8316908	Gold flowering stage	185.287
SRP132670	SRR6706286	Control	147.969
	SRR6706287	Light intensity 50%	161.725
	SRR6706288	Light intensity 20%	117.626
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.758
	CNS0095593	Slightly white alabastrum(diploid) 2	63.853
	CNS0095594	Slightly white alabastrum(diploid) 3	53.984
	CNS0095595	Whole white alabastrum(diploid) 2	52.910
	CNS0095596	Whole white alabastrum(diploid) 3	53.709
	CNS0095597	Whole white alabastrum(diploid) 4	50.838
	CNS0095598	Silvery flower (diploied) 1	239.592
	CNS0095599	Silvery flower (diploied) 2	195.737
	CNS0095600	Silvery flower (diploied) 3	377.587
	CNS0095601	Golden flower (diploid) 1	106.145
	CNS0095602	Golden flower (diploid) 2	233.886
	CNS0095603	Golden flower (diploid) 3	220.652
	CNS0095604	Slightly white alabastrum(tetraploid) 1	59.731
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.071
	CNS0095606	Slightly white alabastrum(tetraploid) 3	92.951
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.187
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.975
	CNS0095609	Whole white alabastrum(tetraploid) 3	60.814
	CNS0095610	Silvery flower (tetraploid) 1	584.969
	CNS0095611	Silvery flower (tetraploid) 2	515.028
	CNS0095612	Silvery flower (tetraploid) 3	336.514
	CNS0095613	Golden flower (tetraploid) 1	97.627
	CNS0095614	Golden flower (tetraploid) 2	219.478
	CNS0095615	Golden flower (tetraploid) 3	111.816
CRA001975	CRR073297	Stem 1	114.225
	CRR073298	Stem 2	158.453
	CRR073299	Stem 3	128.481
	CRR073300	Leaf 1	138.369
	CRR073301	Leaf 2	148.082
	CRR073302	Leaf 3	118.634
	CRR073303	Juvenile bud 1	138.043
	CRR073304	Juvenile bud 2	283.600
	CRR073305	Juvenile bud 3	181.124
	CRR073306	Third green 1	526.739
	CRR073307	Third green 2	545.322
	CRR073308	Third green 3	531.910
	CRR073309	Second white 1	436.486
	CRR073310	Second white 2	143.187
	CRR073311	Second white 3	89.904
	CRR073312	Silver flowering 1	60.945
	CRR073313	Silver flowering 2	77.384
	CRR073314	Silver flowering 3	65.132
	CRR073315	Gold flowering 1	81.899
	CRR073316	Gold flowering 2	226.011
	CRR073317	Gold flowering 3	167.978
	CRR073318	Tawny withering 1	119.242
	CRR073319	Tawny withering 2	251.264
	CRR073320	Tawny withering 3	52.173