Gene detail

Detail information of GWHGAAZE016535

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN83288.1	4.1026E-125	hypothetical protein VITISV_033233 [Vitis vinifera]
trEMBL	tr\|A5BIS5\|A5BIS5_VITVI	2E-125	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83288.1}
TAIR10	AT1G75090.1	3E-88	DNA glycosylase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78342880	78345547	-
GWHAAZE00000004	mRNA	78342880	78345547	-
GWHAAZE00000004	exon	78342880	78343221	-
GWHAAZE00000004	exon	78344297	78344441	-
GWHAAZE00000004	exon	78344538	78344679	-
GWHAAZE00000004	exon	78345214	78345547	-
GWHAAZE00000004	CDS	78345214	78345547	-
GWHAAZE00000004	CDS	78344538	78344679	-
GWHAAZE00000004	CDS	78344297	78344441	-
GWHAAZE00000004	CDS	78342880	78343221	-

Transcript Sequence
>GWHTAAZE016555 ATGCCTGTAGCTACAGAATTCCGTTCACCAGTTAAACCCAGCTCCGAAACTCGATCGATATTAGGGCTTGGTGGTAACAGAGTTAAGGTTTTCGAAGAATCGAAGAGAAAAAAGGGGATTTTGAAGAAAACAGAGAAGCCAAAGCCGGAAAATGTTGATCGGAGCAATAATGTGGCGGTGGATAGTTATTGTTCATCGGATTCTTCTTGCAGTGGGTCTTCGGTTAAAACTGGGAGTTCGAAGAGGAGAGTGAAGAAGCCTAACGTGTTCAAGTCTGTGAATGTTGAGGGTGCCTTGCCGTTGAAGCGGTGTGATTGGATCACACCAAACTCCGATCCACTTTATACTTCCTTTCATGATGAAGAATGGGGAGTTCCAGTTCATGAAGATGGGAAGCTCTTTGAGCTGCTTGTTTTGTCACAAGCATTGGCAGAATTCACCTGGCCTGCAATTCTTAACAAGAGAGACACATTCAGGAAGCATTTTGAGAATTTTGACCCATCGTCGGTCGCAAAGTTCACTGAGAAGAATTTTGTTTCGATGAGATCAAATGGCAGCAGCCCATTGCTATCTGAACCAAAGTTCCGTGCAGTTGTTGAAAATGCTAATCAGCTACTTAAGGTCCAGAAGGAATTTGGTTCCTTCAGCAACTACTGCTGGCGCTTCGTGAACCACAATCCCATAAGAAATGGATTCCGGTATGCACGCCAAATACCGGCTAAAACCCCCAAATCAGAACTAATAAGCAAGGATTTGATGCAGAGGGGATTCCGTTGTGTGGGACCCACCGTCGTGTATTCATTCATGCAAGTCTCCGGTATGGTTAATGATCATCTTTTATCGTGCCCCAAATACCACGAGTGCAATAACAAACCAGCTAAAACAGATTCGAATTCCAAATTCGAAGAGAAGACAGAACTGCAGGCCGAGGCGGTTGAGAGCCGAAGCGTATCTAATGACTGA

Network for GWHGAAZE016535

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03352.14	Adenine_glyco	110	284	4.40E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01246	tag	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006284	biological_process	base-excision repair
GO:0003824	molecular_function	catalytic activity
GO:0008725	molecular_function	DNA-3-methyladenine glycosylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.084
	SRR3591706	second leaf	13.350
	SRR3591707	mature leaf	3.044
	SRR3591708	Shoot apex	16.880
	SRR3591709	Stem	49.431
	SRR3591710	White floral bud	2.552
	SRR3591711	White flower	2.837
	SRR3591712	Green floral bud	8.979
	SRR3591713	Yellow flower	0.164
SRP173429	SRR8316895	Juvenile bud stage	9.683
	SRR8316896	Juvenile bud stage	15.974
	SRR8316897	Juvenile bud stage	5.275
	SRR8316894	Third green stage	4.929
	SRR8316900	Third green stage	3.970
	SRR8316901	Third green stage	5.268
	SRR8316898	Complete white stage	1.346
	SRR8316899	Complete white stage	2.336
	SRR8316903	Complete white stage	0.776
	SRR8316902	Silver flowering stage	0.040
	SRR8316904	Silver flowering stage	0.122
	SRR8316905	Silver flowering stage	0.118
	SRR8316906	Gold flowering stage	0.246
	SRR8316907	Gold flowering stage	0.087
	SRR8316908	Gold flowering stage	0.005
SRP132670	SRR6706286	Control	7.190
	SRR6706287	Light intensity 50%	6.370
	SRR6706288	Light intensity 20%	7.722
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.496
	CNS0095593	Slightly white alabastrum(diploid) 2	4.689
	CNS0095594	Slightly white alabastrum(diploid) 3	9.174
	CNS0095595	Whole white alabastrum(diploid) 2	1.639
	CNS0095596	Whole white alabastrum(diploid) 3	2.378
	CNS0095597	Whole white alabastrum(diploid) 4	0.617
	CNS0095598	Silvery flower (diploied) 1	0.281
	CNS0095599	Silvery flower (diploied) 2	0.058
	CNS0095600	Silvery flower (diploied) 3	0.663
	CNS0095601	Golden flower (diploid) 1	0.087
	CNS0095602	Golden flower (diploid) 2	0.390
	CNS0095603	Golden flower (diploid) 3	0.174
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.868
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.809
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.245
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.341
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.350
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.815
	CNS0095610	Silvery flower (tetraploid) 1	0.258
	CNS0095611	Silvery flower (tetraploid) 2	0.605
	CNS0095612	Silvery flower (tetraploid) 3	0.649
	CNS0095613	Golden flower (tetraploid) 1	0.110
	CNS0095614	Golden flower (tetraploid) 2	0.310
	CNS0095615	Golden flower (tetraploid) 3	0.072
CRA001975	CRR073297	Stem 1	22.935
	CRR073298	Stem 2	19.675
	CRR073299	Stem 3	21.531
	CRR073300	Leaf 1	3.364
	CRR073301	Leaf 2	4.002
	CRR073302	Leaf 3	4.527
	CRR073303	Juvenile bud 1	0.556
	CRR073304	Juvenile bud 2	0.437
	CRR073305	Juvenile bud 3	0.938
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.393
	CRR073308	Third green 3	0.307
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.062
	CRR073311	Second white 3	0.086
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.660
	CRR073314	Silver flowering 3	0.054
	CRR073315	Gold flowering 1	0.126
	CRR073316	Gold flowering 2	0.876
	CRR073317	Gold flowering 3	0.835
	CRR073318	Tawny withering 1	52.918
	CRR073319	Tawny withering 2	28.792
	CRR073320	Tawny withering 3	78.872