Detail information of GWHGAAZE016562


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006341960.13.3595E-168PREDICTED: proteasome subunit alpha type-1-B-like [Solanum tuberosum]
Swissprottr|O23712|PSA1B_ARATH2E-152Proteasome subunit alpha type-1-B
trEMBLtr|M0ZWK0|M0ZWK0_SOLTU1E-168Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}
TAIR10AT1G47250.11E-12020S proteasome alpha subunit F2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7884564878850032-
GWHAAZE00000004mRNA7884564878850032-
GWHAAZE00000004exon7884968278850032-
GWHAAZE00000004exon7884564878846130-
GWHAAZE00000004CDS7884968278850032-
GWHAAZE00000004CDS7884564878846130-
Transcript Sequence

Network for GWHGAAZE016562

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0088


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10584.10Proteasome_A_N6286.80E-14
PF00227.27Proteasome292132.00E-58
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02725PSMA1 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0051603biological_processproteolysis involved in cellular protein catabolic process
GO:0019773cellular_componentproteasome core complex, alpha-subunit complex
GO:0005839cellular_componentproteasome core complex
GO:0004175molecular_functionendopeptidase activity
GO:0004298molecular_functionthreonine-type endopeptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf221.902
SRR3591706second leaf103.824
SRR3591707mature leaf65.629
SRR3591708Shoot apex199.027
SRR3591709Stem158.745
SRR3591710White floral bud190.248
SRR3591711White flower464.228
SRR3591712Green floral bud251.928
SRR3591713Yellow flower472.083
SRP173429 SRR8316895Juvenile bud stage 116.941
SRR8316896Juvenile bud stage 170.729
SRR8316897Juvenile bud stage 91.438
SRR8316894Third green stage 69.483
SRR8316900Third green stage 265.913
SRR8316901Third green stage 260.555
SRR8316898Complete white stage 102.613
SRR8316899Complete white stage 267.079
SRR8316903Complete white stage 124.471
SRR8316902Silver flowering stage131.688
SRR8316904Silver flowering stage128.223
SRR8316905Silver flowering stage74.131
SRR8316906Gold flowering stage 400.341
SRR8316907Gold flowering stage 379.082
SRR8316908Gold flowering stage 353.090
SRP132670SRR6706286Control174.743
SRR6706287Light intensity 50%180.796
SRR6706288Light intensity 20%213.910
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1205.318
CNS0095593Slightly white alabastrum(diploid) 2259.210
CNS0095594Slightly white alabastrum(diploid) 3198.580
CNS0095595Whole white alabastrum(diploid) 2207.107
CNS0095596Whole white alabastrum(diploid) 3230.910
CNS0095597Whole white alabastrum(diploid) 4191.357
CNS0095598Silvery flower (diploied) 1135.854
CNS0095599Silvery flower (diploied) 2164.106
CNS0095600Silvery flower (diploied) 3267.275
CNS0095601Golden flower (diploid) 1158.664
CNS0095602Golden flower (diploid) 2223.482
CNS0095603Golden flower (diploid) 3231.639
CNS0095604Slightly white alabastrum(tetraploid) 1219.304
CNS0095605Slightly white alabastrum(tetraploid) 2201.946
CNS0095606Slightly white alabastrum(tetraploid) 3269.043
CNS0095607Whole white alabastrum(tetraploid) 1149.219
CNS0095608Whole white alabastrum(tetraploid) 2142.262
CNS0095609Whole white alabastrum(tetraploid) 3237.572
CNS0095610Silvery flower (tetraploid) 1322.003
CNS0095611Silvery flower (tetraploid) 2328.305
CNS0095612Silvery flower (tetraploid) 3266.515
CNS0095613Golden flower (tetraploid) 1333.024
CNS0095614Golden flower (tetraploid) 2337.385
CNS0095615Golden flower (tetraploid) 3430.862
CRA001975CRR073297Stem 1195.637
CRR073298Stem 2184.158
CRR073299Stem 3296.189
CRR073300Leaf 1276.017
CRR073301Leaf 2284.662
CRR073302Leaf 3454.644
CRR073303Juvenile bud 1440.677
CRR073304Juvenile bud 2416.362
CRR073305Juvenile bud 3346.346
CRR073306Third green 1216.602
CRR073307Third green 2210.650
CRR073308Third green 3179.899
CRR073309Second white 1574.088
CRR073310Second white 2413.079
CRR073311Second white 3280.918
CRR073312Silver flowering 1228.528
CRR073313Silver flowering 2336.629
CRR073314Silver flowering 3220.135
CRR073315Gold flowering 1150.147
CRR073316Gold flowering 2157.009
CRR073317Gold flowering 3153.542
CRR073318Tawny withering 1260.946
CRR073319Tawny withering 2204.418
CRR073320Tawny withering 3253.849