Gene detail

Detail information of GWHGAAZE016572

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010275528.1	7.5053E-155	PREDICTED: cytokinin dehydrogenase 5-like isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q67YU0\|CKX5_ARATH	6E-79	Cytokinin dehydrogenase 5 (Precursor)
trEMBL	tr\|M4C7Q1\|M4C7Q1_BRARP	3E-109	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Bra000229.1-P}
TAIR10	AT1G75450.1	6E-63	cytokinin oxidase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78979932	78984399	-
GWHAAZE00000004	mRNA	78979932	78984399	-
GWHAAZE00000004	exon	78984154	78984399	-
GWHAAZE00000004	exon	78983341	78983569	-
GWHAAZE00000004	exon	78982784	78982911	-
GWHAAZE00000004	exon	78981399	78981661	-
GWHAAZE00000004	exon	78981192	78981257	-
GWHAAZE00000004	exon	78979932	78979971	-
GWHAAZE00000004	CDS	78984154	78984399	-
GWHAAZE00000004	CDS	78983341	78983569	-
GWHAAZE00000004	CDS	78982784	78982911	-
GWHAAZE00000004	CDS	78981399	78981661	-
GWHAAZE00000004	CDS	78981192	78981257	-
GWHAAZE00000004	CDS	78979932	78979971	-

Transcript Sequence
>GWHTAAZE016592 ATGGCTACGTTGCTTCTTTTGACGTTGGCCATATCTCGGCTAATCCTGACCGTCGGATTACCCACTCAGCCTTTCAAAGCTCAAATTGGCTCTCGGCTCAGCTTCGATCCACTCGATCTCCAAATGGCTTCTCTCGACTTTGGTGGGATGGCCCTAGTCGAGCCTCTCGCCGTTTTCCACCCTTCTTCAGCCGAGGACGTAGCTCAACTGGTCCGAACCGCTTACGAGTCGGCTCGTGGTTTTACGCCGGCTGGGCCTAGAGTTTCCCAGAAATTGATGTTTGTTGATGTGTGGGGTGGAGAACTGTGGATAGATGTGCTGAAGTCCACTCTAAAGTATGGACTAGCACCAAAGTCGTGGACTGATTACTTGTACCTTTCCGTGGGTGGTACGCTCTCTAATGCCGGGATCAGTGGTCAAGCTTTTCGCCATGGCCCACAGATTACCAATGTCTATGAACTTGATGTTGTAACAGGCAAGGGAGAGGTGTTGACATGTTCACAGGAACAAAACACAGAATTGTACCATGCTGTTCTTGGTGGTCTAGGCCAATTTGGGATCATCACTAGAGCTAGAATTGCACTTGAACCTGCCCCTCAAAGGGAAGTGGAGGGTATGTTGAAGATACTAGGTTATTTGCCAGCATCAGAATTCGTAAGTGATGTTCCATACTTGGAGTTTTTGGACCGGGTTCACAAGGAGGAGTTGAAGCTCCGGTCCATGAATTTGTGGGAGGTACCACACCCATGGCTCAACCTATTTGTGCCCAAATCAAGGATAGCTGACTTTGATAAAGGGGTCATCAAGGGCATTTTGGGCAACAAGTCAAGTGGCCCCATCCTCATCTACCCAATGAACAGAAACAAGTGGGATGAGAAAAGCTCAGTTATGATACCAAAGGAAGAAGTGTTTTACTTGGTAGCATTGCTAAGTAAGTTGCAACCCCCTGTCCCTTCAACAAAGAAGCCATAG

Network for GWHGAAZE016572

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	90	167	8.10E-09
PF09265.11	Cytokin-bind	200	315	2.20E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00279	CKX	Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0009690	biological_process	cytokinin metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0019139	molecular_function	cytokinin dehydrogenase activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.088
	SRR3591706	second leaf	0.312
	SRR3591707	mature leaf	3.211
	SRR3591708	Shoot apex	0.077
	SRR3591709	Stem	0.939
	SRR3591710	White floral bud	0.931
	SRR3591711	White flower	0.370
	SRR3591712	Green floral bud	0.914
	SRR3591713	Yellow flower	0.291
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.061
	SRR8316897	Juvenile bud stage	0.236
	SRR8316894	Third green stage	0.085
	SRR8316900	Third green stage	0.164
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.061
	SRR8316899	Complete white stage	0.253
	SRR8316903	Complete white stage	0.103
	SRR8316902	Silver flowering stage	0.078
	SRR8316904	Silver flowering stage	0.064
	SRR8316905	Silver flowering stage	0.106
	SRR8316906	Gold flowering stage	0.293
	SRR8316907	Gold flowering stage	0.583
	SRR8316908	Gold flowering stage	0.756
SRP132670	SRR6706286	Control	1.061
	SRR6706287	Light intensity 50%	0.397
	SRR6706288	Light intensity 20%	0.460
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.091
	CNS0095593	Slightly white alabastrum(diploid) 2	0.042
	CNS0095594	Slightly white alabastrum(diploid) 3	0.044
	CNS0095595	Whole white alabastrum(diploid) 2	0.242
	CNS0095596	Whole white alabastrum(diploid) 3	0.136
	CNS0095597	Whole white alabastrum(diploid) 4	0.054
	CNS0095598	Silvery flower (diploied) 1	0.079
	CNS0095599	Silvery flower (diploied) 2	0.477
	CNS0095600	Silvery flower (diploied) 3	0.340
	CNS0095601	Golden flower (diploid) 1	0.538
	CNS0095602	Golden flower (diploid) 2	0.570
	CNS0095603	Golden flower (diploid) 3	0.684
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.054
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.453
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.061
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.046
	CNS0095610	Silvery flower (tetraploid) 1	0.043
	CNS0095611	Silvery flower (tetraploid) 2	0.140
	CNS0095612	Silvery flower (tetraploid) 3	0.380
	CNS0095613	Golden flower (tetraploid) 1	0.075
	CNS0095614	Golden flower (tetraploid) 2	0.299
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.456
	CRR073298	Stem 2	0.415
	CRR073299	Stem 3	0.122
	CRR073300	Leaf 1	0.096
	CRR073301	Leaf 2	0.139
	CRR073302	Leaf 3	0.026
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.097
	CRR073306	Third green 1	0.052
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.137
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.193
	CRR073312	Silver flowering 1	0.198
	CRR073313	Silver flowering 2	0.249
	CRR073314	Silver flowering 3	0.134
	CRR073315	Gold flowering 1	0.094
	CRR073316	Gold flowering 2	0.369
	CRR073317	Gold flowering 3	2.513
	CRR073318	Tawny withering 1	0.376
	CRR073319	Tawny withering 2	0.747
	CRR073320	Tawny withering 3	0.000