Detail information of GWHGAAZE016576


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007017671.14.6244E-149JHL18I08.10 protein isoform 2 [Theobroma cacao]
trEMBLtr|A0A061FCW1|A0A061FCW1_THECC2E-149JHL18I08.10 protein isoform 2 {ECO:0000313|EMBL:EOY14896.1}
TAIR10AT1G75510.13E-91Transcription initiation factor IIF, beta subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7903573079042308-
GWHAAZE00000004mRNA7903573079042308-
GWHAAZE00000004exon7903573079035960-
GWHAAZE00000004exon7903614479036296-
GWHAAZE00000004exon7903710279037176-
GWHAAZE00000004exon7903742379037553-
GWHAAZE00000004exon7903867779038785-
GWHAAZE00000004exon7904218079042308-
GWHAAZE00000004CDS7904218079042308-
GWHAAZE00000004CDS7903867779038785-
GWHAAZE00000004CDS7903742379037553-
GWHAAZE00000004CDS7903710279037176-
GWHAAZE00000004CDS7903614479036296-
GWHAAZE00000004CDS7903584179035960-
GWHAAZE00000004three_prime_UTR7903573079035840-
Transcript Sequence

Network for GWHGAAZE016576

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17683.2TFIIF_beta_N21127.70E-06
PF02270.16TFIIF_beta1662291.80E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03139TFIIF2, GTF2F2, TFG2 Basal transcription factors map03022

Gene Ontology

GO term OntologyName
GO:0006367biological_processtranscription initiation from RNA polymerase II promoter

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.627
SRR3591706second leaf24.054
SRR3591707mature leaf32.310
SRR3591708Shoot apex40.409
SRR3591709Stem55.111
SRR3591710White floral bud64.388
SRR3591711White flower86.469
SRR3591712Green floral bud72.741
SRR3591713Yellow flower70.073
SRP173429 SRR8316895Juvenile bud stage 22.841
SRR8316896Juvenile bud stage 45.962
SRR8316897Juvenile bud stage 17.868
SRR8316894Third green stage 23.354
SRR8316900Third green stage 67.459
SRR8316901Third green stage 65.542
SRR8316898Complete white stage 26.772
SRR8316899Complete white stage 74.294
SRR8316903Complete white stage 41.043
SRR8316902Silver flowering stage33.657
SRR8316904Silver flowering stage40.568
SRR8316905Silver flowering stage18.988
SRR8316906Gold flowering stage 69.334
SRR8316907Gold flowering stage 67.617
SRR8316908Gold flowering stage 66.297
SRP132670SRR6706286Control17.936
SRR6706287Light intensity 50%17.587
SRR6706288Light intensity 20%19.191
CNP0000432CNS0095592Slightly white alabastrum(diploid) 164.750
CNS0095593Slightly white alabastrum(diploid) 261.683
CNS0095594Slightly white alabastrum(diploid) 363.429
CNS0095595Whole white alabastrum(diploid) 276.543
CNS0095596Whole white alabastrum(diploid) 383.060
CNS0095597Whole white alabastrum(diploid) 480.870
CNS0095598Silvery flower (diploied) 162.187
CNS0095599Silvery flower (diploied) 251.560
CNS0095600Silvery flower (diploied) 365.577
CNS0095601Golden flower (diploid) 165.522
CNS0095602Golden flower (diploid) 266.901
CNS0095603Golden flower (diploid) 369.078
CNS0095604Slightly white alabastrum(tetraploid) 127.981
CNS0095605Slightly white alabastrum(tetraploid) 224.815
CNS0095606Slightly white alabastrum(tetraploid) 342.428
CNS0095607Whole white alabastrum(tetraploid) 120.369
CNS0095608Whole white alabastrum(tetraploid) 219.515
CNS0095609Whole white alabastrum(tetraploid) 332.731
CNS0095610Silvery flower (tetraploid) 149.190
CNS0095611Silvery flower (tetraploid) 259.456
CNS0095612Silvery flower (tetraploid) 338.864
CNS0095613Golden flower (tetraploid) 136.495
CNS0095614Golden flower (tetraploid) 246.681
CNS0095615Golden flower (tetraploid) 340.619
CRA001975CRR073297Stem 150.817
CRR073298Stem 250.739
CRR073299Stem 339.369
CRR073300Leaf 163.570
CRR073301Leaf 256.815
CRR073302Leaf 353.012
CRR073303Juvenile bud 151.099
CRR073304Juvenile bud 248.188
CRR073305Juvenile bud 334.180
CRR073306Third green 125.911
CRR073307Third green 225.917
CRR073308Third green 326.018
CRR073309Second white 115.621
CRR073310Second white 235.343
CRR073311Second white 325.281
CRR073312Silver flowering 116.603
CRR073313Silver flowering 210.520
CRR073314Silver flowering 323.512
CRR073315Gold flowering 128.564
CRR073316Gold flowering 241.492
CRR073317Gold flowering 39.340
CRR073318Tawny withering 140.977
CRR073319Tawny withering 239.842
CRR073320Tawny withering 335.063