Detail information of GWHGAAZE016578


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP07449.10unnamed protein product [Coffea canephora]
Swissprottr|Q94A40|COPA1_ARATH0Coatomer subunit alpha-1
trEMBLtr|A0A068UGV7|A0A068UGV7_COFCA0Coatomer subunit alpha {ECO:0000256|PIRNR:PIRNR003354}
TAIR10AT1G62020.10Coatomer, alpha subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7906185579069387-
GWHAAZE00000004mRNA7906185579069387-
GWHAAZE00000004exon7906185579062730-
GWHAAZE00000004exon7906281379064806-
GWHAAZE00000004exon7906601979066513-
GWHAAZE00000004exon7906918079069387-
GWHAAZE00000004CDS7906918079069387-
GWHAAZE00000004CDS7906601979066513-
GWHAAZE00000004CDS7906281379064806-
GWHAAZE00000004CDS7906185579062730-
Transcript Sequence

Network for GWHGAAZE016578

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4045797.80E-05
PF00400.33WD40841214.80E-08
PF00400.33WD401261636.60E-07
PF00400.33WD401982310.00036
PF00400.33WD402412763.20E-05
PF04053.15Coatomer_WDAD3467686.40E-131
PF06957.12COPI_C8158981.60E-11
PF06957.12COPI_C90311903.30E-126
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport
GO:0030126cellular_componentCOPI vesicle coat
GO:0030117cellular_componentmembrane coat
GO:0005515molecular_functionprotein binding
GO:0005198molecular_functionstructural molecule activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE016578.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560657075Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf55.229
SRR3591706second leaf23.987
SRR3591707mature leaf10.275
SRR3591708Shoot apex29.513
SRR3591709Stem25.948
SRR3591710White floral bud31.877
SRR3591711White flower23.924
SRR3591712Green floral bud54.657
SRR3591713Yellow flower19.069
SRP173429 SRR8316895Juvenile bud stage 27.016
SRR8316896Juvenile bud stage 40.578
SRR8316897Juvenile bud stage 18.495
SRR8316894Third green stage 17.470
SRR8316900Third green stage 53.756
SRR8316901Third green stage 52.001
SRR8316898Complete white stage 12.710
SRR8316899Complete white stage 39.623
SRR8316903Complete white stage 24.990
SRR8316902Silver flowering stage9.331
SRR8316904Silver flowering stage14.629
SRR8316905Silver flowering stage7.414
SRR8316906Gold flowering stage 23.514
SRR8316907Gold flowering stage 23.744
SRR8316908Gold flowering stage 24.984
SRP132670SRR6706286Control32.222
SRR6706287Light intensity 50%38.300
SRR6706288Light intensity 20%41.240
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.099
CNS0095593Slightly white alabastrum(diploid) 224.884
CNS0095594Slightly white alabastrum(diploid) 325.120
CNS0095595Whole white alabastrum(diploid) 225.781
CNS0095596Whole white alabastrum(diploid) 328.527
CNS0095597Whole white alabastrum(diploid) 422.844
CNS0095598Silvery flower (diploied) 117.050
CNS0095599Silvery flower (diploied) 215.930
CNS0095600Silvery flower (diploied) 332.958
CNS0095601Golden flower (diploid) 113.413
CNS0095602Golden flower (diploid) 228.715
CNS0095603Golden flower (diploid) 327.557
CNS0095604Slightly white alabastrum(tetraploid) 137.982
CNS0095605Slightly white alabastrum(tetraploid) 227.792
CNS0095606Slightly white alabastrum(tetraploid) 360.492
CNS0095607Whole white alabastrum(tetraploid) 128.282
CNS0095608Whole white alabastrum(tetraploid) 227.968
CNS0095609Whole white alabastrum(tetraploid) 363.265
CNS0095610Silvery flower (tetraploid) 127.023
CNS0095611Silvery flower (tetraploid) 223.406
CNS0095612Silvery flower (tetraploid) 325.749
CNS0095613Golden flower (tetraploid) 111.730
CNS0095614Golden flower (tetraploid) 224.778
CNS0095615Golden flower (tetraploid) 312.473
CRA001975CRR073297Stem 144.383
CRR073298Stem 244.289
CRR073299Stem 344.576
CRR073300Leaf 160.211
CRR073301Leaf 256.378
CRR073302Leaf 350.196
CRR073303Juvenile bud 156.535
CRR073304Juvenile bud 257.065
CRR073305Juvenile bud 370.618
CRR073306Third green 126.717
CRR073307Third green 220.178
CRR073308Third green 325.739
CRR073309Second white 128.741
CRR073310Second white 222.647
CRR073311Second white 322.873
CRR073312Silver flowering 124.876
CRR073313Silver flowering 228.856
CRR073314Silver flowering 322.889
CRR073315Gold flowering 113.474
CRR073316Gold flowering 219.080
CRR073317Gold flowering 317.552
CRR073318Tawny withering 133.896
CRR073319Tawny withering 224.845
CRR073320Tawny withering 333.379