Detail information of GWHGAAZE016579


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278969.24.0448E-154PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Vitis vinifera]
trEMBLtr|E0CPJ0|E0CPJ0_VITVI2E-154Putative uncharacterized protein {ECO:0000313|EMBL:CBI19806.3}
TAIR10AT4G29860.11E-110Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7907666679083037-
GWHAAZE00000004mRNA7907666679083037-
GWHAAZE00000004exon7908288979083037-
GWHAAZE00000004exon7908236479082420-
GWHAAZE00000004exon7908151979081652-
GWHAAZE00000004exon7908070379080761-
GWHAAZE00000004exon7908049279080573-
GWHAAZE00000004exon7907992379079989-
GWHAAZE00000004exon7907786379077945-
GWHAAZE00000004exon7907767279077763-
GWHAAZE00000004exon7907731179077417-
GWHAAZE00000004exon7907690179076964-
GWHAAZE00000004exon7907666679076812-
GWHAAZE00000004CDS7908288979083037-
GWHAAZE00000004CDS7908236479082420-
GWHAAZE00000004CDS7908151979081652-
GWHAAZE00000004CDS7908070379080761-
GWHAAZE00000004CDS7908049279080573-
GWHAAZE00000004CDS7907992379079989-
GWHAAZE00000004CDS7907786379077945-
GWHAAZE00000004CDS7907767279077763-
GWHAAZE00000004CDS7907731179077417-
GWHAAZE00000004CDS7907690179076964-
GWHAAZE00000004CDS7907670879076812-
GWHAAZE00000004three_prime_UTR7907666679076707-
Transcript Sequence

Network for GWHGAAZE016579

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402893230.015
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.514
SRR3591706second leaf4.371
SRR3591707mature leaf10.321
SRR3591708Shoot apex10.880
SRR3591709Stem9.386
SRR3591710White floral bud7.858
SRR3591711White flower9.617
SRR3591712Green floral bud10.036
SRR3591713Yellow flower5.177
SRP173429 SRR8316895Juvenile bud stage 5.866
SRR8316896Juvenile bud stage 7.829
SRR8316897Juvenile bud stage 3.309
SRR8316894Third green stage 3.340
SRR8316900Third green stage 8.468
SRR8316901Third green stage 8.015
SRR8316898Complete white stage 2.758
SRR8316899Complete white stage 15.295
SRR8316903Complete white stage 3.186
SRR8316902Silver flowering stage3.488
SRR8316904Silver flowering stage2.453
SRR8316905Silver flowering stage1.115
SRR8316906Gold flowering stage 4.199
SRR8316907Gold flowering stage 5.151
SRR8316908Gold flowering stage 4.050
SRP132670SRR6706286Control6.545
SRR6706287Light intensity 50%7.149
SRR6706288Light intensity 20%8.021
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.196
CNS0095593Slightly white alabastrum(diploid) 210.571
CNS0095594Slightly white alabastrum(diploid) 39.453
CNS0095595Whole white alabastrum(diploid) 28.922
CNS0095596Whole white alabastrum(diploid) 37.156
CNS0095597Whole white alabastrum(diploid) 48.910
CNS0095598Silvery flower (diploied) 112.384
CNS0095599Silvery flower (diploied) 26.039
CNS0095600Silvery flower (diploied) 35.516
CNS0095601Golden flower (diploid) 19.920
CNS0095602Golden flower (diploid) 26.511
CNS0095603Golden flower (diploid) 36.224
CNS0095604Slightly white alabastrum(tetraploid) 19.770
CNS0095605Slightly white alabastrum(tetraploid) 27.953
CNS0095606Slightly white alabastrum(tetraploid) 311.091
CNS0095607Whole white alabastrum(tetraploid) 14.340
CNS0095608Whole white alabastrum(tetraploid) 24.025
CNS0095609Whole white alabastrum(tetraploid) 310.211
CNS0095610Silvery flower (tetraploid) 16.216
CNS0095611Silvery flower (tetraploid) 26.158
CNS0095612Silvery flower (tetraploid) 34.121
CNS0095613Golden flower (tetraploid) 16.139
CNS0095614Golden flower (tetraploid) 26.667
CNS0095615Golden flower (tetraploid) 32.952
CRA001975CRR073297Stem 19.419
CRR073298Stem 27.690
CRR073299Stem 37.743
CRR073300Leaf 19.991
CRR073301Leaf 210.141
CRR073302Leaf 37.941
CRR073303Juvenile bud 17.001
CRR073304Juvenile bud 25.820
CRR073305Juvenile bud 39.470
CRR073306Third green 11.100
CRR073307Third green 20.729
CRR073308Third green 30.938
CRR073309Second white 12.039
CRR073310Second white 20.687
CRR073311Second white 31.192
CRR073312Silver flowering 10.944
CRR073313Silver flowering 20.705
CRR073314Silver flowering 30.718
CRR073315Gold flowering 16.636
CRR073316Gold flowering 29.050
CRR073317Gold flowering 36.744
CRR073318Tawny withering 17.193
CRR073319Tawny withering 29.651
CRR073320Tawny withering 36.622