Detail information of GWHGAAZE016580


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664768.17.30791E-42PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X2 [Vitis vinifera]
Swissprottr|Q5VQ78|COB21_ORYSJ0.000003Coatomer subunit beta'-1
trEMBLtr|E0CPJ0|E0CPJ0_VITVI3E-41Putative uncharacterized protein {ECO:0000313|EMBL:CBI19806.3}
TAIR10AT4G29860.13E-30Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7908529779085815-
GWHAAZE00000004mRNA7908529779085815-
GWHAAZE00000004exon7908529779085399-
GWHAAZE00000004exon7908553979085601-
GWHAAZE00000004exon7908571279085815-
GWHAAZE00000004CDS7908571279085815-
GWHAAZE00000004CDS7908553979085601-
GWHAAZE00000004CDS7908529779085399-
Transcript Sequence

Network for GWHGAAZE016580

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD409458.20E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE016580.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301234567891011121314Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.965
SRR3591706second leaf2.906
SRR3591707mature leaf4.629
SRR3591708Shoot apex6.386
SRR3591709Stem5.500
SRR3591710White floral bud7.574
SRR3591711White flower5.812
SRR3591712Green floral bud6.207
SRR3591713Yellow flower2.793
SRP173429 SRR8316895Juvenile bud stage 2.347
SRR8316896Juvenile bud stage 4.522
SRR8316897Juvenile bud stage 3.749
SRR8316894Third green stage 2.175
SRR8316900Third green stage 3.757
SRR8316901Third green stage 4.019
SRR8316898Complete white stage 0.744
SRR8316899Complete white stage 4.564
SRR8316903Complete white stage 2.876
SRR8316902Silver flowering stage1.099
SRR8316904Silver flowering stage2.019
SRR8316905Silver flowering stage0.224
SRR8316906Gold flowering stage 1.686
SRR8316907Gold flowering stage 2.611
SRR8316908Gold flowering stage 1.595
SRP132670SRR6706286Control11.179
SRR6706287Light intensity 50%11.080
SRR6706288Light intensity 20%11.353
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.543
CNS0095593Slightly white alabastrum(diploid) 21.844
CNS0095594Slightly white alabastrum(diploid) 30.432
CNS0095595Whole white alabastrum(diploid) 21.842
CNS0095596Whole white alabastrum(diploid) 32.917
CNS0095597Whole white alabastrum(diploid) 41.463
CNS0095598Silvery flower (diploied) 15.841
CNS0095599Silvery flower (diploied) 21.776
CNS0095600Silvery flower (diploied) 31.793
CNS0095601Golden flower (diploid) 14.606
CNS0095602Golden flower (diploid) 23.938
CNS0095603Golden flower (diploid) 33.421
CNS0095604Slightly white alabastrum(tetraploid) 13.241
CNS0095605Slightly white alabastrum(tetraploid) 23.819
CNS0095606Slightly white alabastrum(tetraploid) 36.349
CNS0095607Whole white alabastrum(tetraploid) 12.846
CNS0095608Whole white alabastrum(tetraploid) 20.850
CNS0095609Whole white alabastrum(tetraploid) 35.414
CNS0095610Silvery flower (tetraploid) 12.705
CNS0095611Silvery flower (tetraploid) 25.428
CNS0095612Silvery flower (tetraploid) 31.825
CNS0095613Golden flower (tetraploid) 12.000
CNS0095614Golden flower (tetraploid) 24.215
CNS0095615Golden flower (tetraploid) 33.160
CRA001975CRR073297Stem 19.411
CRR073298Stem 28.755
CRR073299Stem 38.338
CRR073300Leaf 19.424
CRR073301Leaf 27.406
CRR073302Leaf 37.882
CRR073303Juvenile bud 19.199
CRR073304Juvenile bud 26.135
CRR073305Juvenile bud 38.001
CRR073306Third green 10.788
CRR073307Third green 20.587
CRR073308Third green 30.481
CRR073309Second white 12.308
CRR073310Second white 22.445
CRR073311Second white 32.109
CRR073312Silver flowering 10.548
CRR073313Silver flowering 20.600
CRR073314Silver flowering 34.123
CRR073315Gold flowering 19.257
CRR073316Gold flowering 29.996
CRR073317Gold flowering 36.374
CRR073318Tawny withering 16.400
CRR073319Tawny withering 25.274
CRR073320Tawny withering 313.248