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Detail information of GWHGAAZE016580
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_010664768.1
7.30791E-42
PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X2 [Vitis vinifera]
Swissprot
tr|Q5VQ78|COB21_ORYSJ
0.000003
Coatomer subunit beta'-1
trEMBL
tr|E0CPJ0|E0CPJ0_VITVI
3E-41
Putative uncharacterized protein {ECO:0000313|EMBL:CBI19806.3}
TAIR10
AT4G29860.1
3E-30
Transducin/WD40 repeat-like superfamily protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000004
gene
79085297
79085815
-
GWHAAZE00000004
mRNA
79085297
79085815
-
GWHAAZE00000004
exon
79085297
79085399
-
GWHAAZE00000004
exon
79085539
79085601
-
GWHAAZE00000004
exon
79085712
79085815
-
GWHAAZE00000004
CDS
79085712
79085815
-
GWHAAZE00000004
CDS
79085539
79085601
-
GWHAAZE00000004
CDS
79085297
79085399
-
Transcript Sequence
>GWHTAAZE016600 ATGAGCAAGGGACCTCCACCTGATCCGGTGGCAGTATTGAGAGGTCATCGTGCTTCTGTCATGGATGCATGTTTCCATCCATCTGAAAACTTGTTATTCACTGGTTCTGCAGATGGTGAATTGCGTATTTGGGATACGGTGCAGCATCGGACTATGGCATCTGCATGGGTGCATAGTGCAGCGCACGGGATAATTTGTGTTGCTACTAGTCCTTTGATTGGAGACAACAAAGTTGTTAGGTACATTCTTTGTTTGTTTTATGACTTTTGA
Network for GWHGAAZE016580
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00400.33
WD40
9
45
8.20E-09
Protein Sequence
>GWHPAAZE016590 MSKGPPPDPVAVLRGHRASVMDACFHPSENLLFTGSADGELRIWDTVQHRTMASAWVHSAAHGIICVATSPLIGDNKVVRYILCLFYDF
Gene family
Gene family
subfamily
Ubiquitin Family
DWD
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0005515
molecular_function
protein binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
3.965
SRR3591706
second leaf
2.906
SRR3591707
mature leaf
4.629
SRR3591708
Shoot apex
6.386
SRR3591709
Stem
5.500
SRR3591710
White floral bud
7.574
SRR3591711
White flower
5.812
SRR3591712
Green floral bud
6.207
SRR3591713
Yellow flower
2.793
SRP173429
SRR8316895
Juvenile bud stage
2.347
SRR8316896
Juvenile bud stage
4.522
SRR8316897
Juvenile bud stage
3.749
SRR8316894
Third green stage
2.175
SRR8316900
Third green stage
3.757
SRR8316901
Third green stage
4.019
SRR8316898
Complete white stage
0.744
SRR8316899
Complete white stage
4.564
SRR8316903
Complete white stage
2.876
SRR8316902
Silver flowering stage
1.099
SRR8316904
Silver flowering stage
2.019
SRR8316905
Silver flowering stage
0.224
SRR8316906
Gold flowering stage
1.686
SRR8316907
Gold flowering stage
2.611
SRR8316908
Gold flowering stage
1.595
SRP132670
SRR6706286
Control
11.179
SRR6706287
Light intensity 50%
11.080
SRR6706288
Light intensity 20%
11.353
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
3.543
CNS0095593
Slightly white alabastrum(diploid) 2
1.844
CNS0095594
Slightly white alabastrum(diploid) 3
0.432
CNS0095595
Whole white alabastrum(diploid) 2
1.842
CNS0095596
Whole white alabastrum(diploid) 3
2.917
CNS0095597
Whole white alabastrum(diploid) 4
1.463
CNS0095598
Silvery flower (diploied) 1
5.841
CNS0095599
Silvery flower (diploied) 2
1.776
CNS0095600
Silvery flower (diploied) 3
1.793
CNS0095601
Golden flower (diploid) 1
4.606
CNS0095602
Golden flower (diploid) 2
3.938
CNS0095603
Golden flower (diploid) 3
3.421
CNS0095604
Slightly white alabastrum(tetraploid) 1
3.241
CNS0095605
Slightly white alabastrum(tetraploid) 2
3.819
CNS0095606
Slightly white alabastrum(tetraploid) 3
6.349
CNS0095607
Whole white alabastrum(tetraploid) 1
2.846
CNS0095608
Whole white alabastrum(tetraploid) 2
0.850
CNS0095609
Whole white alabastrum(tetraploid) 3
5.414
CNS0095610
Silvery flower (tetraploid) 1
2.705
CNS0095611
Silvery flower (tetraploid) 2
5.428
CNS0095612
Silvery flower (tetraploid) 3
1.825
CNS0095613
Golden flower (tetraploid) 1
2.000
CNS0095614
Golden flower (tetraploid) 2
4.215
CNS0095615
Golden flower (tetraploid) 3
3.160
CRA001975
CRR073297
Stem 1
9.411
CRR073298
Stem 2
8.755
CRR073299
Stem 3
8.338
CRR073300
Leaf 1
9.424
CRR073301
Leaf 2
7.406
CRR073302
Leaf 3
7.882
CRR073303
Juvenile bud 1
9.199
CRR073304
Juvenile bud 2
6.135
CRR073305
Juvenile bud 3
8.001
CRR073306
Third green 1
0.788
CRR073307
Third green 2
0.587
CRR073308
Third green 3
0.481
CRR073309
Second white 1
2.308
CRR073310
Second white 2
2.445
CRR073311
Second white 3
2.109
CRR073312
Silver flowering 1
0.548
CRR073313
Silver flowering 2
0.600
CRR073314
Silver flowering 3
4.123
CRR073315
Gold flowering 1
9.257
CRR073316
Gold flowering 2
9.996
CRR073317
Gold flowering 3
6.374
CRR073318
Tawny withering 1
6.400
CRR073319
Tawny withering 2
5.274
CRR073320
Tawny withering 3
13.248