Gene detail

Detail information of GWHGAAZE016582

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010664765.1	PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Vitis vinifera]
Swissprot	tr\|F4JLS1\|LDL3_ARATH	Lysine-specific histone demethylase 1 homolog 3
trEMBL	tr\|A0A067L282\|A0A067L282_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP38595.1}
TAIR10	AT4G16310.1	LSD1-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	79102146	79108756	+
GWHAAZE00000004	mRNA	79102146	79108756	+
GWHAAZE00000004	exon	79102146	79102316	+
GWHAAZE00000004	exon	79102528	79104687	+
GWHAAZE00000004	exon	79104797	79104890	+
GWHAAZE00000004	exon	79105008	79105468	+
GWHAAZE00000004	exon	79105987	79106706	+
GWHAAZE00000004	exon	79108062	79108136	+
GWHAAZE00000004	exon	79108422	79108756	+
GWHAAZE00000004	CDS	79102146	79102316	+
GWHAAZE00000004	CDS	79102528	79104687	+
GWHAAZE00000004	CDS	79104797	79104890	+
GWHAAZE00000004	CDS	79105008	79105468	+
GWHAAZE00000004	CDS	79105987	79106706	+
GWHAAZE00000004	CDS	79108062	79108136	+
GWHAAZE00000004	CDS	79108422	79108487	+
GWHAAZE00000004	three_prime_UTR	79108488	79108756	+

Transcript Sequence
>GWHTAAZE016602 ATGGACTATAATTGTTTCATGCAATGCAGGAATCATATCTTAGGTCTTTGGAGTAAAGATGTCAGTCGCATTTTGCCTCTTTCAGACTGTGGAGTCTCTGATTCCCCTGTGGCGGATGAACCGCAGTGTGCTTCTCTTGTTAGGGATATTTATGCATTTCTCGATCATTGCGGTTATATAAATTTTGGAGTTGCTTCTAAAAAGGAGATAGCAGAAGCTGGTGCTGAGCATAACCTCAAGCTTTTGGAAGAGAAAAAAACTGGGGGCGCAGTTGCTGATTCAGATGATGGGGTTTCTTTTATCCTTGGTGGGGTTAAGCATTTGGAGACTTCTGTGGAGGAAAAGAATGGTTCTATATTGGATGATGAAAATAGGGTCAAGCATTTGCAGGCTTTGGAACTTTCATCTCCAACAGTTCCGGAAGGATCGGATTGTTATGAGGAAAAAAGCCTTATTGATGCAAAACCTTCCAACATAAAGCTTGATTTGGCTATTTTGAGCTCAAATTCCTTTATGGAAGCAGCGAAAGGTGGGGCAACACCTGTCACATGTGAAGAGCTCCAAAAAGAGAGTCATTGTAACACAGAGGGGAATCATCATATGGAGTGTGACTCAGAAATGAGAAAGAGCGTCATTGTTATAGGAGCTGGTCCAGCTGGCTTGACTGCAGCACGCCACTTGCAGCGCCAGGGTTTTCATGTTACTGTGCTTGAGGCTAGGAGTAGAATAGGGGGTCGCGTTTTTACAGACCGGTCATCTCTCTCGGTTCCAGTGGATCTTGGGGCTAGCATTATTACAGGTGTTGAGGCGGACGTGGCTACAGAAAGAAGACCAGACCCTTCTTCGTTGGTTTGTGCTCAATTGGGCCTTGAGTTGACGGTATTGAACAGTGACTGCCCTCTTTACGATATTGTTACGGGGGAGAAAGTTCCTCCAGATTTGGACGAGTCTTTGGAAGGAGAATACAACAGCCTACTCGACGACACATTAGTGCTTGTTGCACAGAAGGGGGAACATGCAATGAGAATGTCTCTTGAGGATGGTTTAGAACATGCCCTTAAGAAACGTCGGGCAGTTGACCATGGTCCTAAAGAGGATATTTTGAGTCCCCTTGAGAGGAGAGTAATGGATTGGCATTTTGCCAACTTGGAGTATGGTTGCGCTGCTTTGCTTAAAGAAGTATCTCTTCCTCACTGGAACCAGGATGATGTGTATGGAGGTTTTGGTGGAGCTCATTGTATGATTAAAGGGGGTTATAGCAATGTTGTTGAATCTTTGGGAGAAGGACTTCACATCCACTTGAACCATGTGGTCACTGATGTTTCGTATTGCACTAAGGACCGTTTAACAAACGATGATCACTCTAACAAAGTCAGAGTTTCCACATCAAACGGCAGGGATTTTTTGGGAGATGCAGTCCTAATCACAGTTCCCCTTGGGTGCCTAAAAGCGGAAAGCATAAAGTTTTCGCCTTCATTACCCCAGTGGAAATACTCATCGATCCAGCGGCTTGGTTTCGGTGTACTTAATAAAGTAGTCCTCGAATTTCCAGAAGTTTTTTGGGATGATTCTGTTGATTATTTCGGTGCAACTGCTGAGGAAACAAACAAGAGGGGTCAGTGCTTTATGTTCTGGAATGTGAAGAAAACAGTTGGGGCACCTGTTCTTATAGCCTTGGTTGTTGGCAAGGCAGCAATAGATGGCCATAATATGAGCTCGTCTGATCATGTACACCATGCTGTAAACGTTCTTCGAAAACTTTTTGGGGAAACCATTGTACCAGACCCAGTTGCTTCGGTAGTAACCGACTGGGGAAGGGACCCATACAGCTATGGTGCTTACTCTTATGTTTCAGTGGGGGCCACTGGGGAAGATTATGATATATTGGGTAGGCCGGTGGAGAATTGTTTGTTTTTTGCCGGGGAAGCGACCTGTAAAGAGCATCCAGATACTGTCGGTGGTGCAATGATGAGTGGGCTTCGAGAGGCTGTGAGAATAATCGAGATATTAAGCACAGGAAGTGATTATACTGCAGAAGTAGACGCAATGGAGGCTGCACAGAGACGTTCTTACGGTGAAAGAAGTGAAGTTAGGGACATCATTGAGAGACTGGAGGCTGTAGAGCTATCGAATGTTATGTACAATAGTAACTCTTTGGATGGTGCTGAATTTTTCACCAGGGAAGGTTTGCTAAAGGATATGTTCTCCAATGCCAAAACTGCAGCCGGACGATTACATCTGGTGAAGGAGCTGTTGAATCTTCCTGTTGAAGTTCTGAAATCCTTTGCTGGGACTAAAGAAGGGCTCACCATTCTCAACTCTTGGATACTGGATTCGTTGGGAAAGGATGGGACTCAACTCTTGCGTCACTGTGTTCGTCTCCTTGTACTTGTTTCAACGGATCTACTTGCAGTCCGTTTATCAGGTATAGGGAAAACTGTAAAAGAAAAAGTTTGTGTACATACAAGCCGTGATATACGCGCCATAGCAAGCCAGCTGGTTAGTGTATGGATAGAGGTTTTCCGCAAGGAGAAGGCAACCAATGGTGGCCTGAAGTTACTGAGGCAGTCAACTGCTTTCGATTCTTCAAAAAGCAAATCTAATATAGCTTCGGGAAAACCACCTCTGCGTACACATCAAGGTGCCCCAGACAAGAAAGGAAATTCAAAGGTTGGATCCAACAGAAACCTTAGAAAAGTCAAGCCAGGCAAATTGGACACCAGGATCGACTCAAAATCTGAGGTTAAACCATTTATGTCTCAAGGTTCAGTTGGAAGGCAAGATTCTAAGAGGGAGGAAAACAGAGATTTTGCCATGTCTGAAGAAGAAAAGGCGGCCTTGGCTGCAGCAGAGGCAGCTCGTGCTGCTGAGCTTGCAGCTGCTGAGGCATATGCGTCCTCGGGTGCAAGGTGCAACACATTGCTGCAGCTTCCTAAGATACCGTCATTTCACAAATTTGCTAGACGTGAGCAATATGCCCAAATGGATGAGGCCGATGTTAAAAAGAAGTGGTCTGGTGGTGTTTTAGGTAGACAAGATTGCATATCGGAAATAGATTCGAGGAATTGCCGAGTAAGGGATTGGTCTGTCGATTTCTCTGCTGCCGGTGTCAATCTTGACAGTTCAAAAATGTCGATCGATAATAACCGTTCACCGAGGAGCCACTCGAATGAGATTCCAGCATCCCAATTGAACTTTAGAGAGCACTCTGGAGAAAGTGCAAGTATGGCCGCAGATAGCGGTATATTTACAAAAGCATGGGTTGATAGTGCTGGTAGTGAAGGGATAAAGGATTATAGTGCAATTGAGAGATGGCAATCTCAAGCAGCTGCCGCTGATTCTGATTTCTTTCATCGGACTATGCACTTGAGGGACGAGGTAGAATCAAACATGGATTCAAATCAACCTACTTGGAAGCGTCATAATGAGAGCTCTACTTCACAAGTTACGACAAATAGAGAGTTGGTCAATAGTCAACCTAGAGGACTCGAGCATATTAAACAAGCTGTTGTGGATTATGTTGCGTCGTTGCTCATGCCTCTTTACAAAGCAAGAAAAATAGACAAGGACGGTTACAAGTCAATAATGAAGAAAACCGCAACCAAGGTTGTAGAACAGACCACAGATGCGGAGAAATTGATGGCTGTTTTTGAGTTTCTTGATTTTAAGCGCAAAAACAAGATTCGAGCCTTCGTGGACAAGTTGATTGAGCGGCACATGGCAACGAAACCGGCTGTCAAATCTTGACAGTCCTGAGGATTGCCTGGTCCCGTGTTTTGGTGCACCTGGTATCCAAGACTTAAGAGAAACCATTTCCTTTCCGTTCGTCATGGGTTCAGCATCTATTGGGTGGCTCTGGATTCTATTTTACACCGCAAGTGTTTCCTCCAGATACTTTCTATAGCGGTCAGAAGTTGCAGAGGAAGAAGGGCAGACAGCCCTTGTAAGCATCTACCAAATCCAATTGTAATTGGTCGGGCCTCTATGATATCCTCCCAACAAGGGAAACCATTTTC

Network for GWHGAAZE016582

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	6	62	1.10E-07
PF01593.25	Amino_oxidase	219	667	7.00E-105

Protein Sequence

>GWHPAAZE016592
MDYNCFMQCRNHILGLWSKDVSRILPLSDCGVSDSPVADEPQCASLVRDIYAFLDHCGYINFGVASKKEIAEAGAEHNLKLLEEKKTGGAVADSDDGVSFILGGVKHLETSVEEKNGSILDDENRVKHLQALELSSPTVPEGSDCYEEKSLIDAKPSNIKLDLAILSSNSFMEAAKGGATPVTCEELQKESHCNTEGNHHMECDSEMRKSVIVIGAGPAGLTAARHLQRQGFHVTVLEARSRIGGRVFTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLVCAQLGLELTVLNSDCPLYDIVTGEKVPPDLDESLEGEYNSLLDDTLVLVAQKGEHAMRMSLEDGLEHALKKRRAVDHGPKEDILSPLERRVMDWHFANLEYGCAALLKEVSLPHWNQDDVYGGFGGAHCMIKGGYSNVVESLGEGLHIHLNHVVTDVSYCTKDRLTNDDHSNKVRVSTSNGRDFLGDAVLITVPLGCLKAESIKFSPSLPQWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETNKRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGHNMSSSDHVHHAVNVLRKLFGETIVPDPVASVVTDWGRDPYSYGAYSYVSVGATGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIEILSTGSDYTAEVDAMEAAQRRSYGERSEVRDIIERLEAVELSNVMYNSNSLDGAEFFTREGLLKDMFSNAKTAAGRLHLVKELLNLPVEVLKSFAGTKEGLTILNSWILDSLGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWIEVFRKEKATNGGLKLLRQSTAFDSSKSKSNIASGKPPLRTHQGAPDKKGNSKVGSNRNLRKVKPGKLDTRIDSKSEVKPFMSQGSVGRQDSKREENRDFAMSEEEKAALAAAEAARAAELAAAEAYASSGARCNTLLQLPKIPSFHKFARREQYAQMDEADVKKKWSGGVLGRQDCISEIDSRNCRVRDWSVDFSAAGVNLDSSKMSIDNNRSPRSHSNEIPASQLNFREHSGESASMAADSGIFTKAWVDSAGSEGIKDYSAIERWQSQAAAADSDFFHRTMHLRDEVESNMDSNQPTWKRHNESSTSQVTTNRELVNSQPRGLEHIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKTATKVVEQTTDAEKLMAVFEFLDFKRKNKIRAFVDKLIERHMATKPAVKS

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-SWI3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.866
	SRR3591706	second leaf	5.811
	SRR3591707	mature leaf	8.124
	SRR3591708	Shoot apex	11.294
	SRR3591709	Stem	9.694
	SRR3591710	White floral bud	9.643
	SRR3591711	White flower	12.687
	SRR3591712	Green floral bud	10.616
	SRR3591713	Yellow flower	9.296
SRP173429	SRR8316895	Juvenile bud stage	5.788
	SRR8316896	Juvenile bud stage	8.541
	SRR8316897	Juvenile bud stage	4.421
	SRR8316894	Third green stage	4.101
	SRR8316900	Third green stage	7.099
	SRR8316901	Third green stage	7.166
	SRR8316898	Complete white stage	1.429
	SRR8316899	Complete white stage	6.706
	SRR8316903	Complete white stage	5.622
	SRR8316902	Silver flowering stage	3.036
	SRR8316904	Silver flowering stage	5.688
	SRR8316905	Silver flowering stage	2.423
	SRR8316906	Gold flowering stage	8.537
	SRR8316907	Gold flowering stage	8.111
	SRR8316908	Gold flowering stage	9.599
SRP132670	SRR6706286	Control	8.437
	SRR6706287	Light intensity 50%	8.660
	SRR6706288	Light intensity 20%	8.505
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.520
	CNS0095593	Slightly white alabastrum(diploid) 2	4.934
	CNS0095594	Slightly white alabastrum(diploid) 3	4.848
	CNS0095595	Whole white alabastrum(diploid) 2	4.257
	CNS0095596	Whole white alabastrum(diploid) 3	3.896
	CNS0095597	Whole white alabastrum(diploid) 4	5.088
	CNS0095598	Silvery flower (diploied) 1	7.323
	CNS0095599	Silvery flower (diploied) 2	5.732
	CNS0095600	Silvery flower (diploied) 3	11.470
	CNS0095601	Golden flower (diploid) 1	7.433
	CNS0095602	Golden flower (diploid) 2	13.118
	CNS0095603	Golden flower (diploid) 3	13.093
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.367
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.423
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.968
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.988
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.453
	CNS0095610	Silvery flower (tetraploid) 1	11.339
	CNS0095611	Silvery flower (tetraploid) 2	10.998
	CNS0095612	Silvery flower (tetraploid) 3	10.592
	CNS0095613	Golden flower (tetraploid) 1	5.337
	CNS0095614	Golden flower (tetraploid) 2	9.701
	CNS0095615	Golden flower (tetraploid) 3	14.532
CRA001975	CRR073297	Stem 1	12.139
	CRR073298	Stem 2	10.067
	CRR073299	Stem 3	9.520
	CRR073300	Leaf 1	9.331
	CRR073301	Leaf 2	8.904
	CRR073302	Leaf 3	5.365
	CRR073303	Juvenile bud 1	7.363
	CRR073304	Juvenile bud 2	5.546
	CRR073305	Juvenile bud 3	12.422
	CRR073306	Third green 1	4.651
	CRR073307	Third green 2	2.959
	CRR073308	Third green 3	4.506
	CRR073309	Second white 1	4.624
	CRR073310	Second white 2	5.836
	CRR073311	Second white 3	7.542
	CRR073312	Silver flowering 1	8.655
	CRR073313	Silver flowering 2	8.101
	CRR073314	Silver flowering 3	7.757
	CRR073315	Gold flowering 1	4.041
	CRR073316	Gold flowering 2	7.370
	CRR073317	Gold flowering 3	5.111
	CRR073318	Tawny withering 1	7.326
	CRR073319	Tawny withering 2	6.470
	CRR073320	Tawny withering 3	6.084