Detail information of GWHGAAZE016592


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADU15474.14.6212E-109AP3 [Actinidia eriantha]
Swissprottr|P23706|DEFA_ANTMA2E-101Floral homeotic protein DEFICIENS
trEMBLtr|F4ZKM2|F4ZKM2_ACTER2E-109AP3 {ECO:0000313|EMBL:ADU15474.1}
TAIR10AT3G54340.11E-68K-box region and MADS-box transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7925501879260192-
GWHAAZE00000004mRNA7925501879260192-
GWHAAZE00000004exon7925501879255245-
GWHAAZE00000004exon7925565979255718-
GWHAAZE00000004exon7925704779257091-
GWHAAZE00000004exon7925719779257238-
GWHAAZE00000004exon7925814379258317-
GWHAAZE00000004exon7925843779258531-
GWHAAZE00000004exon7925939579259461-
GWHAAZE00000004exon7926000579260192-
GWHAAZE00000004CDS7926000579260192-
GWHAAZE00000004CDS7925939579259461-
GWHAAZE00000004CDS7925843779258531-
GWHAAZE00000004CDS7925814379258317-
GWHAAZE00000004CDS7925719779257238-
GWHAAZE00000004CDS7925704779257091-
GWHAAZE00000004CDS7925565979255718-
GWHAAZE00000004CDS7925501879255245-
Transcript Sequence

Network for GWHGAAZE016592

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00319.19SRF-TF10577.40E-24
PF01486.18K-box952032.50E-18
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMADS-MIKC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0045944biological_processpositive regulation of transcription by RNA polymerase II
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0046983molecular_functionprotein dimerization activity
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0000977molecular_functionRNA polymerase II transcription regulatory region sequence-specific DNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.457
SRR3591706second leaf4.871
SRR3591707mature leaf2.592
SRR3591708Shoot apex9.029
SRR3591709Stem6.314
SRR3591710White floral bud599.452
SRR3591711White flower498.932
SRR3591712Green floral bud284.891
SRR3591713Yellow flower590.385
SRP173429 SRR8316895Juvenile bud stage 108.675
SRR8316896Juvenile bud stage 139.718
SRR8316897Juvenile bud stage 85.679
SRR8316894Third green stage 67.065
SRR8316900Third green stage 274.016
SRR8316901Third green stage 244.565
SRR8316898Complete white stage 275.576
SRR8316899Complete white stage 408.174
SRR8316903Complete white stage 428.941
SRR8316902Silver flowering stage224.088
SRR8316904Silver flowering stage242.603
SRR8316905Silver flowering stage123.274
SRR8316906Gold flowering stage 319.488
SRR8316907Gold flowering stage 330.968
SRR8316908Gold flowering stage 256.644
SRP132670SRR6706286Control38.424
SRR6706287Light intensity 50%41.004
SRR6706288Light intensity 20%45.864
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1132.591
CNS0095593Slightly white alabastrum(diploid) 2155.096
CNS0095594Slightly white alabastrum(diploid) 3111.364
CNS0095595Whole white alabastrum(diploid) 2120.387
CNS0095596Whole white alabastrum(diploid) 3127.131
CNS0095597Whole white alabastrum(diploid) 4115.630
CNS0095598Silvery flower (diploied) 1132.606
CNS0095599Silvery flower (diploied) 2158.361
CNS0095600Silvery flower (diploied) 3472.972
CNS0095601Golden flower (diploid) 1165.993
CNS0095602Golden flower (diploid) 2342.214
CNS0095603Golden flower (diploid) 3342.444
CNS0095604Slightly white alabastrum(tetraploid) 1172.904
CNS0095605Slightly white alabastrum(tetraploid) 2146.792
CNS0095606Slightly white alabastrum(tetraploid) 3254.487
CNS0095607Whole white alabastrum(tetraploid) 178.699
CNS0095608Whole white alabastrum(tetraploid) 2101.377
CNS0095609Whole white alabastrum(tetraploid) 3212.860
CNS0095610Silvery flower (tetraploid) 1489.658
CNS0095611Silvery flower (tetraploid) 2498.431
CNS0095612Silvery flower (tetraploid) 3649.986
CNS0095613Golden flower (tetraploid) 1524.706
CNS0095614Golden flower (tetraploid) 2359.653
CNS0095615Golden flower (tetraploid) 3431.619
CRA001975CRR073297Stem 1126.830
CRR073298Stem 2139.428
CRR073299Stem 3104.167
CRR073300Leaf 1173.994
CRR073301Leaf 2155.981
CRR073302Leaf 3140.521
CRR073303Juvenile bud 1160.571
CRR073304Juvenile bud 2181.759
CRR073305Juvenile bud 3134.447
CRR073306Third green 1205.454
CRR073307Third green 2192.395
CRR073308Third green 3167.287
CRR073309Second white 1165.474
CRR073310Second white 2224.215
CRR073311Second white 3154.318
CRR073312Silver flowering 1114.954
CRR073313Silver flowering 281.734
CRR073314Silver flowering 390.979
CRR073315Gold flowering 11.349
CRR073316Gold flowering 25.071
CRR073317Gold flowering 30.700
CRR073318Tawny withering 14.164
CRR073319Tawny withering 22.003
CRR073320Tawny withering 34.048