Detail information of GWHGAAZE016615


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN74785.10hypothetical protein VITISV_011516 [Vitis vinifera]
Swissprottr|C6L7U1|LIN1_LOTJA0Putative E3 ubiquitin-protein ligase LIN-1 {ECO:0000250|UniProtKB:D1FP53}
trEMBLtr|A5BNH0|A5BNH0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN74785.1}
TAIR10AT3G06880.23E-60Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7974540079753569-
GWHAAZE00000004mRNA7974540079753569-
GWHAAZE00000004exon7974540079745493-
GWHAAZE00000004exon7974614479746392-
GWHAAZE00000004exon7974689579747038-
GWHAAZE00000004exon7974723879747348-
GWHAAZE00000004exon7974744379747565-
GWHAAZE00000004exon7974781079747941-
GWHAAZE00000004exon7974822879748347-
GWHAAZE00000004exon7974845379748577-
GWHAAZE00000004exon7974867279748984-
GWHAAZE00000004exon7974908379749340-
GWHAAZE00000004exon7974943079749574-
GWHAAZE00000004exon7974983879751112-
GWHAAZE00000004exon7975127179751327-
GWHAAZE00000004exon7975146679751578-
GWHAAZE00000004exon7975198279752377-
GWHAAZE00000004exon7975247479752549-
GWHAAZE00000004exon7975265679753569-
GWHAAZE00000004CDS7975265679753569-
GWHAAZE00000004CDS7975247479752549-
GWHAAZE00000004CDS7975198279752377-
GWHAAZE00000004CDS7975146679751578-
GWHAAZE00000004CDS7975127179751327-
GWHAAZE00000004CDS7974983879751112-
GWHAAZE00000004CDS7974943079749574-
GWHAAZE00000004CDS7974908379749340-
GWHAAZE00000004CDS7974867279748984-
GWHAAZE00000004CDS7974845379748577-
GWHAAZE00000004CDS7974822879748347-
GWHAAZE00000004CDS7974781079747941-
GWHAAZE00000004CDS7974744379747565-
GWHAAZE00000004CDS7974723879747348-
GWHAAZE00000004CDS7974689579747038-
GWHAAZE00000004CDS7974614479746392-
GWHAAZE00000004CDS7974547679745493-
GWHAAZE00000004three_prime_UTR7974540079745475-
Transcript Sequence

Network for GWHGAAZE016615

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04564.16U-box5476175.10E-14
PF00400.33WD40127613100.00063
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016567biological_processprotein ubiquitination
GO:0004842molecular_functionubiquitin-protein transferase activity
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.052
SRR3591706second leaf0.359
SRR3591707mature leaf0.960
SRR3591708Shoot apex0.097
SRR3591709Stem0.000
SRR3591710White floral bud0.034
SRR3591711White flower0.085
SRR3591712Green floral bud0.036
SRR3591713Yellow flower0.086
SRP173429 SRR8316895Juvenile bud stage 0.943
SRR8316896Juvenile bud stage 1.288
SRR8316897Juvenile bud stage 0.174
SRR8316894Third green stage 0.297
SRR8316900Third green stage 0.509
SRR8316901Third green stage 0.282
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.057
SRR8316903Complete white stage 0.027
SRR8316902Silver flowering stage0.030
SRR8316904Silver flowering stage0.121
SRR8316905Silver flowering stage0.030
SRR8316906Gold flowering stage 0.125
SRR8316907Gold flowering stage 0.227
SRR8316908Gold flowering stage 0.264
SRP132670SRR6706286Control0.150
SRR6706287Light intensity 50%0.168
SRR6706288Light intensity 20%0.171
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.205
CNS0095593Slightly white alabastrum(diploid) 20.145
CNS0095594Slightly white alabastrum(diploid) 30.405
CNS0095595Whole white alabastrum(diploid) 20.205
CNS0095596Whole white alabastrum(diploid) 30.198
CNS0095597Whole white alabastrum(diploid) 40.154
CNS0095598Silvery flower (diploied) 10.139
CNS0095599Silvery flower (diploied) 20.115
CNS0095600Silvery flower (diploied) 30.142
CNS0095601Golden flower (diploid) 10.180
CNS0095602Golden flower (diploid) 20.130
CNS0095603Golden flower (diploid) 30.101
CNS0095604Slightly white alabastrum(tetraploid) 10.393
CNS0095605Slightly white alabastrum(tetraploid) 20.229
CNS0095606Slightly white alabastrum(tetraploid) 30.087
CNS0095607Whole white alabastrum(tetraploid) 10.082
CNS0095608Whole white alabastrum(tetraploid) 20.082
CNS0095609Whole white alabastrum(tetraploid) 30.071
CNS0095610Silvery flower (tetraploid) 10.012
CNS0095611Silvery flower (tetraploid) 20.027
CNS0095612Silvery flower (tetraploid) 30.019
CNS0095613Golden flower (tetraploid) 10.033
CNS0095614Golden flower (tetraploid) 20.063
CNS0095615Golden flower (tetraploid) 30.014
CRA001975CRR073297Stem 10.694
CRR073298Stem 20.457
CRR073299Stem 30.337
CRR073300Leaf 10.184
CRR073301Leaf 20.240
CRR073302Leaf 30.077
CRR073303Juvenile bud 10.094
CRR073304Juvenile bud 20.024
CRR073305Juvenile bud 30.022
CRR073306Third green 10.034
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.029
CRR073311Second white 30.051
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.020
CRR073315Gold flowering 10.748
CRR073316Gold flowering 21.764
CRR073317Gold flowering 30.534
CRR073318Tawny withering 10.208
CRR073319Tawny withering 20.226
CRR073320Tawny withering 30.146