Gene detail

Detail information of GWHGAAZE016617

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011083570.1	0	PREDICTED: uncharacterized protein LOC105166052 [Sesamum indicum]
trEMBL	tr\|A0A022RIS7\|A0A022RIS7_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU38800.1}
TAIR10	AT1G30755.1	2E-148	Protein of unknown function (DUF668)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	79767339	79772333	+
GWHAAZE00000004	mRNA	79767339	79772333	+
GWHAAZE00000004	exon	79767339	79767605	+
GWHAAZE00000004	exon	79768635	79768960	+
GWHAAZE00000004	exon	79769077	79769112	+
GWHAAZE00000004	exon	79769240	79769351	+
GWHAAZE00000004	exon	79769678	79769805	+
GWHAAZE00000004	exon	79770053	79770125	+
GWHAAZE00000004	exon	79770259	79770346	+
GWHAAZE00000004	exon	79770471	79770580	+
GWHAAZE00000004	exon	79770690	79770806	+
GWHAAZE00000004	exon	79771496	79771572	+
GWHAAZE00000004	exon	79771710	79771754	+
GWHAAZE00000004	exon	79771850	79772333	+
GWHAAZE00000004	CDS	79767339	79767605	+
GWHAAZE00000004	CDS	79768635	79768960	+
GWHAAZE00000004	CDS	79769077	79769112	+
GWHAAZE00000004	CDS	79769240	79769351	+
GWHAAZE00000004	CDS	79769678	79769805	+
GWHAAZE00000004	CDS	79770053	79770125	+
GWHAAZE00000004	CDS	79770259	79770346	+
GWHAAZE00000004	CDS	79770471	79770580	+
GWHAAZE00000004	CDS	79770690	79770806	+
GWHAAZE00000004	CDS	79771496	79771572	+
GWHAAZE00000004	CDS	79771710	79771754	+
GWHAAZE00000004	CDS	79771850	79772333	+

Transcript Sequence
>GWHTAAZE016637 ATGGGAGGCATGTGTTCCGGTGGAACGATGAAGAAGCGATCATCGTCGGAGGAGGAGTACAGGGAGAGGAGCTCAGGGTTTTCGGGGAAGCTTAAGTCTTTGAATAGTTTCAGTAAGCAAACGGATGATAATTCATATGAAGAATATCCTCCTGATGTTGAATTTTTTGAAAAAAAAATGCACCATCCATTTGATTCTGGTGAATTGCGATTGTCAATTTCCAATGAATTCAAGCCTTCTACTCCTGTTAGAACAATAGCTAACAAGCAATCTCAAACGAGCTCATTTCTTGGTAAAGCTGGCATTGCTGGCCTAGAGAAGGCAGTGGATGTACTAGACACACTTGGCAGCAGCATGTCAAATTTGAATGTCAGCAGCGGCTTCGGATCTAATATGGCTTCGAGAGGGAATAAAATTTTTATCCTGGCATTTGAAGTTGCAAATACCATTGCCAAAGGTGCCAATTTGTTGCAATCTCTTTCCAGGGAAAATATCCAGTTCCTTAAAAAGGAGATTTTGCATTCAGAAGGGGTACAACAGTTAGTTTCCACTGACACAAATGAGTTGCTAAGTATTGCTGCATCTGACAAAAGGGAGGAATTTAATGTTTTCTCTCAGGAAGTAGTCAGAAAATGCTTTCAACACGCCAGGCTTGATTCAGAACCTGCAACTCATAAACAGCTTCGAGAAGAAGCAGAAATGACAATGCATGAATTCACTAATCTGGCTCAGCACACCTCTGAACTGTACCATGAATTAAATACTTTGGACAGATTTGTCCAAGATTATCGAAGGAAGCTCGAGGAAGTGGATTCTTTACATCTACCTCGAAAAGGTTATACTCTTTTTCTCTTAGTGAAGTGTTCTAGTGAGGTAAAAAATCAAAGAAAACTCATAAGGGGCTTGAAAAAGAAATCTCTTTGGTCAAAAAGTTTGGAGGAGGTTGTAGAGAAGCTTGTTGATATTGTCACCTTCATACATCAAGAGATCTTGGAAGCATTTGGAGTTAATGGTATGAGCAATTATCTTAGGGAAGCTTTTACATTTGGTGGCAAGGAATCCACTAACAAGCCTGAAAGACTAGGTGTAGCTGGTCTTGCTTTGCACTATGCCAACATAATCACTCAAATCGATAATGTCGCATCTCGACCCACCTCCCTTCCGCCTAATACGAGGGACACATTATATAATAGTTTACCAAACAGTGTAAAGACAGCTTTACGTTCGCGGCTACAAACTGCTGATGTCAAGGAAGTGCTTACAATTCCCCAAATCAAAGCCGAAATGGAAAAAACTCTTCAATGGCTCGTTCCAATAGCTACAGATACTACCAAAGCGCATCAAGGATTTGGGTGGGTCGGAGAGTGGGCAAACACTGGTAACGAATTCGGCAAGAAGACGGCCACCCAGAACAACATTATTCGCCTCCAAACATTATACCACGCGGATAAGCAGAAAACGGACCAATGCATTCTCGAACTTGTAACTTGCCTTCACCGCCTCATAAGCCGCATACGATTCGGAGACAATGGAAGCCGATCATCCCTACCCATCCGATCGCCAACTCGCAAGGGACTAATGCTGCACACAGACACGCGTGATAACTGCCGGACACATGGGGTCCAGATCTCACATGAGGACAAGATTCTGTTGGAGGAGGTGATGAAGAGGGGAAGGCTGGTTAGGAGGGATAGAAGCAAAAGCCAAGAATTTGTGATGATGGGGAAGAAGAGAAGGAAAAAAGTATGGGCACTTAGTAGGAGCACTGGGAGCTCTCCAAGGAGGGAAGCGTTGGGGCACCAAAATTCCTGTCTTTTAGATGTATTGGATGGGTTGGATTCTACATATTTGAAGGAGGGTTGA

Network for GWHGAAZE016617

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0211

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11961.9	DUF3475	141	197	3.80E-24
PF05003.13	DUF668	360	445	1.60E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.536
	SRR3591706	second leaf	2.227
	SRR3591707	mature leaf	4.129
	SRR3591708	Shoot apex	3.210
	SRR3591709	Stem	8.691
	SRR3591710	White floral bud	8.466
	SRR3591711	White flower	23.341
	SRR3591712	Green floral bud	3.612
	SRR3591713	Yellow flower	39.624
SRP173429	SRR8316895	Juvenile bud stage	4.154
	SRR8316896	Juvenile bud stage	6.945
	SRR8316897	Juvenile bud stage	5.267
	SRR8316894	Third green stage	1.843
	SRR8316900	Third green stage	2.190
	SRR8316901	Third green stage	3.607
	SRR8316898	Complete white stage	2.032
	SRR8316899	Complete white stage	4.533
	SRR8316903	Complete white stage	3.400
	SRR8316902	Silver flowering stage	6.236
	SRR8316904	Silver flowering stage	6.066
	SRR8316905	Silver flowering stage	2.632
	SRR8316906	Gold flowering stage	18.208
	SRR8316907	Gold flowering stage	15.600
	SRR8316908	Gold flowering stage	33.518
SRP132670	SRR6706286	Control	4.938
	SRR6706287	Light intensity 50%	4.279
	SRR6706288	Light intensity 20%	3.313
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.410
	CNS0095593	Slightly white alabastrum(diploid) 2	6.934
	CNS0095594	Slightly white alabastrum(diploid) 3	9.346
	CNS0095595	Whole white alabastrum(diploid) 2	6.761
	CNS0095596	Whole white alabastrum(diploid) 3	1.246
	CNS0095597	Whole white alabastrum(diploid) 4	4.411
	CNS0095598	Silvery flower (diploied) 1	12.039
	CNS0095599	Silvery flower (diploied) 2	8.788
	CNS0095600	Silvery flower (diploied) 3	10.751
	CNS0095601	Golden flower (diploid) 1	12.641
	CNS0095602	Golden flower (diploid) 2	13.915
	CNS0095603	Golden flower (diploid) 3	13.907
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.335
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.779
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.179
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.967
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.324
	CNS0095610	Silvery flower (tetraploid) 1	15.458
	CNS0095611	Silvery flower (tetraploid) 2	8.924
	CNS0095612	Silvery flower (tetraploid) 3	11.346
	CNS0095613	Golden flower (tetraploid) 1	11.269
	CNS0095614	Golden flower (tetraploid) 2	17.409
	CNS0095615	Golden flower (tetraploid) 3	6.003
CRA001975	CRR073297	Stem 1	5.465
	CRR073298	Stem 2	3.598
	CRR073299	Stem 3	3.563
	CRR073300	Leaf 1	3.851
	CRR073301	Leaf 2	4.776
	CRR073302	Leaf 3	1.135
	CRR073303	Juvenile bud 1	1.452
	CRR073304	Juvenile bud 2	1.184
	CRR073305	Juvenile bud 3	1.438
	CRR073306	Third green 1	2.937
	CRR073307	Third green 2	2.057
	CRR073308	Third green 3	2.939
	CRR073309	Second white 1	2.820
	CRR073310	Second white 2	4.513
	CRR073311	Second white 3	3.316
	CRR073312	Silver flowering 1	6.533
	CRR073313	Silver flowering 2	6.210
	CRR073314	Silver flowering 3	6.575
	CRR073315	Gold flowering 1	3.432
	CRR073316	Gold flowering 2	9.640
	CRR073317	Gold flowering 3	5.059
	CRR073318	Tawny withering 1	9.218
	CRR073319	Tawny withering 2	21.204
	CRR073320	Tawny withering 3	7.817