Detail information of GWHGAAZE016638


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002285896.13.60387E-56PREDICTED: E3 ubiquitin-protein ligase ATL23 [Vitis vinifera]
Swissprottr|Q8L9W3|ATL23_ARATH3E-41E3 ubiquitin-protein ligase ATL23
trEMBLtr|A0A061FKT7|A0A061FKT7_THECC2E-56RING/U-box superfamily protein {ECO:0000313|EMBL:EOY15114.1}
TAIR10AT5G42200.12E-33RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8005712480057513+
GWHAAZE00000004mRNA8005712480057513+
GWHAAZE00000004exon8005712480057513+
GWHAAZE00000004CDS8005712480057513+
Transcript Sequence

Network for GWHGAAZE016638

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2691135.10E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.076
SRR3591706second leaf0.494
SRR3591707mature leaf2.262
SRR3591708Shoot apex0.000
SRR3591709Stem12.109
SRR3591710White floral bud12.977
SRR3591711White flower3.997
SRR3591712Green floral bud1.482
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 3.374
SRR8316896Juvenile bud stage 8.696
SRR8316897Juvenile bud stage 8.908
SRR8316894Third green stage 0.517
SRR8316900Third green stage 0.755
SRR8316901Third green stage 6.037
SRR8316898Complete white stage 11.200
SRR8316899Complete white stage 3.134
SRR8316903Complete white stage 14.758
SRR8316902Silver flowering stage29.183
SRR8316904Silver flowering stage8.059
SRR8316905Silver flowering stage0.073
SRR8316906Gold flowering stage 0.202
SRR8316907Gold flowering stage 2.329
SRR8316908Gold flowering stage 0.589
SRP132670SRR6706286Control1.798
SRR6706287Light intensity 50%1.823
SRR6706288Light intensity 20%0.852
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.418
CNS0095593Slightly white alabastrum(diploid) 23.066
CNS0095594Slightly white alabastrum(diploid) 34.366
CNS0095595Whole white alabastrum(diploid) 20.506
CNS0095596Whole white alabastrum(diploid) 31.236
CNS0095597Whole white alabastrum(diploid) 40.886
CNS0095598Silvery flower (diploied) 11.671
CNS0095599Silvery flower (diploied) 20.802
CNS0095600Silvery flower (diploied) 33.734
CNS0095601Golden flower (diploid) 11.184
CNS0095602Golden flower (diploid) 23.335
CNS0095603Golden flower (diploid) 34.343
CNS0095604Slightly white alabastrum(tetraploid) 10.612
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.548
CNS0095607Whole white alabastrum(tetraploid) 10.608
CNS0095608Whole white alabastrum(tetraploid) 20.112
CNS0095609Whole white alabastrum(tetraploid) 30.181
CNS0095610Silvery flower (tetraploid) 10.646
CNS0095611Silvery flower (tetraploid) 20.551
CNS0095612Silvery flower (tetraploid) 31.115
CNS0095613Golden flower (tetraploid) 10.671
CNS0095614Golden flower (tetraploid) 20.345
CNS0095615Golden flower (tetraploid) 31.183
CRA001975CRR073297Stem 12.777
CRR073298Stem 21.270
CRR073299Stem 31.376
CRR073300Leaf 11.325
CRR073301Leaf 22.914
CRR073302Leaf 31.665
CRR073303Juvenile bud 11.360
CRR073304Juvenile bud 22.064
CRR073305Juvenile bud 32.744
CRR073306Third green 13.457
CRR073307Third green 225.138
CRR073308Third green 314.928
CRR073309Second white 10.638
CRR073310Second white 20.905
CRR073311Second white 32.174
CRR073312Silver flowering 12.026
CRR073313Silver flowering 22.451
CRR073314Silver flowering 31.531
CRR073315Gold flowering 13.964
CRR073316Gold flowering 25.202
CRR073317Gold flowering 34.328
CRR073318Tawny withering 136.092
CRR073319Tawny withering 248.063
CRR073320Tawny withering 348.671