Gene detail

Detail information of GWHGAAZE016645

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006435265.1	hypothetical protein CICLE_v10000269mg [Citrus clementina]
Swissprot	tr\|Q9C5Y0\|PLDD1_ARATH	Phospholipase D delta
trEMBL	tr\|A0A067H227\|A0A067H227_CITSI	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR10	AT4G35790.2	phospholipase D delta

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80186430	80193071	+
GWHAAZE00000004	mRNA	80186430	80193071	+
GWHAAZE00000004	exon	80186430	80186810	+
GWHAAZE00000004	exon	80187792	80188250	+
GWHAAZE00000004	exon	80189082	80189172	+
GWHAAZE00000004	exon	80189359	80189417	+
GWHAAZE00000004	exon	80189664	80189858	+
GWHAAZE00000004	exon	80190218	80190499	+
GWHAAZE00000004	exon	80190591	80190659	+
GWHAAZE00000004	exon	80190753	80190900	+
GWHAAZE00000004	exon	80191239	80191387	+
GWHAAZE00000004	exon	80191766	80191978	+
GWHAAZE00000004	exon	80192061	80192288	+
GWHAAZE00000004	exon	80192697	80193071	+
GWHAAZE00000004	CDS	80186430	80186810	+
GWHAAZE00000004	CDS	80187792	80188250	+
GWHAAZE00000004	CDS	80189082	80189172	+
GWHAAZE00000004	CDS	80189359	80189417	+
GWHAAZE00000004	CDS	80189664	80189858	+
GWHAAZE00000004	CDS	80190218	80190499	+
GWHAAZE00000004	CDS	80190591	80190659	+
GWHAAZE00000004	CDS	80190753	80190900	+
GWHAAZE00000004	CDS	80191239	80191387	+
GWHAAZE00000004	CDS	80191766	80191978	+
GWHAAZE00000004	CDS	80192061	80192288	+
GWHAAZE00000004	CDS	80192697	80193071	+

Transcript Sequence
>GWHTAAZE016665 ATGTCGGACCAGCTTCATTCAGATACCACCGTTGTGTACCTTCACGGAGACTTAGATCTCAAAATTCTCGAAGCTCGATGTCTACCTAACATGGATTTGCTCACCGCTCGTCTCCGTAGCTGCTTCACCTTCGACGCTTGTCGCAATCCCTTTCCCCACCGGAAAAATCATAGCCACCACCGGAAAATGATAACCAGCGATCCTTACGTCACCGTGTGCCTAGCCGGAGCCACGGTGGCACGTACGCGCGTGATCTCCAATTGCCAGAGCCCCGTGTGGGACGAGCATTTCAAAATCCCTCTCGCTCACCCTGTCTCCACCGTTGATTTCCTCGTCAAGGATAATGACATGTTCGGCGCTGATATGATCGGAGTTGCCTCTCCGAAGAAGGGAGCTGCAATCAGGTTACAAATGAGATTCATCCAGTGTGATGAATCTTTGTTGTATAATAAAGGCATTGCGACGAATCCGGAAAATTTTGGCCTCAAGGAGAGTTATTTTCCAGTGAGGCATGGAGGATCGGTGACATTGTACCAGGATGCACATGTTCCTGATGGGATGGTACCTCAGATTGAATTGGATGATGGAAAAATGTATACACATGAAAATTGTTGGGAGGATATATGTCATGCGATTTTAGAGGCTCATCATTTGGTGTATATTGTGGGGTGGTCTATTTATCATAAGGTTAGGCTTGTTAGGGAGCCGAGTAAGCCTTTGCCAAGTGGCGGAAATTTGAATCTCGGGGAGCTGCTCAAGTATAAGTCTCAAGAAGGAGTAAGAGTTTTGTTGTTGGTTTGGGATGATAAGACTTCTCACAACAAATTCTTCATTAAAACGGAAGGGTTGATGCAAACTCATGATGAAGAGACTCGGAAATTTTTCAAGCACTCATCTGTCACTTGTGTGTTGGCACCTCGATATGCGAGCATTGTTCCTGCTGTTCATCTATGTTTATTTGGTATCTTTTGCCTTTTCTCCGAAGCCAAAGTTGTTGGAACCCTTTATACACATCATCAGAAATGCGTGATTGTGGATACGCAAGCTGATGGAAACAACCGGAAGATATCTTCTTTTATTGGAGGTCTGGACCTCTGTGATGGACGCTACGACACACCCGAGCATCGTTTGTTTGGGGATCTCAACACTGTGTTCCACTCCGATTTTCACAATCCGACATTTTCTGCAGGAGCAAAGTGTCCGAGGCAACCATGGCATGATTTACATTGCAAAGTCGAAGGACCTGCAGCATATGACGTGCTTAAAAACTTTGAGCAGAGGTGGAGAAAAGCCACAAAATGGTCCGAGATCGGATGGCGGTTCAAAAGAATATCTCATTGGCATGACGATGCTTTAATAAAGATAGAGCGCATCTCGTGGATACTTAGTCCTAATGCATCTACTCCAATTGACGATCCTTCATTGAGGGTTTCCAAGGAAGATGATCCTGAAAACTGGAACATTCAGGTTTTTCGATCTATTGATTCTGGTTCTTTAAAAGGATTTCCCAAAGATGTCCACATAGCTGAGAGCCAGAACCTAGTCTGCGCGAAAAATCTGGTGATTGATAAGAGTATTCAAACAGCCTACGTTCAGGCCATACGATCTGCCCAACACTTCATATATATTGAGAACCAATATTTCATTGGTTCATCTTATGCATGGGGATCCCACAAAGATGCAGGAGCTGACAATCTAATCCCAATCGAGTTGGCATTAAAGATTGCAAGTAAGATAAAAGCAAAGGAGAGGTTTGCAGTTTATATTGTCATTCCAATGTGGCCTGAGGGTGCCCCTACTTCTGCTTCTGTGCAAGCAATTCTCTTTTGGCAGGGACAAACGATGCAAATGATGTATGACATTGTTGCCCAAGAGCTGAACAACTCAGGTCTTGAGGATGCACATCCGCAAGACTACCTGAATTTCTACTGTCTTGGTAATCGGGAAGAACGTCTTGAAGTAGAATCAACGTCAATCAGTCGAACTTCCTCTAGTGGAGCCAAGGGCAGCCAAAAAGAGAATGGGGTCGTGGCCGAAAATTCCAAAGAAATTACATTGAACCAAGCTCTACAGGTTTTGGCTTCGCTGAAATTTGGACGGTTCATGGTATACGTACATGCCAAGGGAATGATCGTGGATGATGAGTATGTGATATTGGGGTCCGCGAATATTAATCAAAGATCAATGGCTGGTTCAAGAGATACTGAGATAGCTATGGGTGCATACCAACCCCATAACACATGGGCTAAGAAGAAAAAACATCCACACGGCCAGCCAGCACCACCAACCTTCAGCATTCCCTTTGTCGGCCTCAAATTTTTGTTTACATTAACATTTAGTACTCGGTTGCAGGTTTACGGGTACAGAATGTCACTGTGGGCAGAGCACTTGGGAAAGCTAGACGATTGCTTCAAGGAGCCAGAGAGTTCGGATTGCGTGGAGAGTGTAAACAAGATTGCCGAAGATAATTGGAAGAGATTCACAGCCGATGAGTTCATTCCGTTACAAGGTCATCTTCTAAAATATCCGGTACAAGTGAATTCTAATGGTAAGGTACGCCCTTTGCCCGGACACGAGAATTTCCCAGATGTAGGTGGTAAAGTGCTTGGAGCTGCCACCCCCACCCTCCCTAATGCTTTGACAACGTAA

Network for GWHGAAZE016645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.31	C2	16	127	2.30E-20
PF00614.23	PLDc	335	369	3.50E-06
PF13091.7	PLDc_2	531	737	1.50E-07
PF12357.9	PLD_C	801	871	1.60E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0046470	biological_process	phosphatidylcholine metabolic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.102
	SRR3591706	second leaf	2.818
	SRR3591707	mature leaf	0.330
	SRR3591708	Shoot apex	6.876
	SRR3591709	Stem	3.717
	SRR3591710	White floral bud	72.266
	SRR3591711	White flower	4.546
	SRR3591712	Green floral bud	53.392
	SRR3591713	Yellow flower	2.860
SRP173429	SRR8316895	Juvenile bud stage	3.739
	SRR8316896	Juvenile bud stage	12.135
	SRR8316897	Juvenile bud stage	6.405
	SRR8316894	Third green stage	5.886
	SRR8316900	Third green stage	27.586
	SRR8316901	Third green stage	27.787
	SRR8316898	Complete white stage	1.046
	SRR8316899	Complete white stage	1.612
	SRR8316903	Complete white stage	1.204
	SRR8316902	Silver flowering stage	0.766
	SRR8316904	Silver flowering stage	2.051
	SRR8316905	Silver flowering stage	0.776
	SRR8316906	Gold flowering stage	0.662
	SRR8316907	Gold flowering stage	0.205
	SRR8316908	Gold flowering stage	0.964
SRP132670	SRR6706286	Control	22.037
	SRR6706287	Light intensity 50%	23.304
	SRR6706288	Light intensity 20%	20.892
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.958
	CNS0095593	Slightly white alabastrum(diploid) 2	22.229
	CNS0095594	Slightly white alabastrum(diploid) 3	30.256
	CNS0095595	Whole white alabastrum(diploid) 2	65.724
	CNS0095596	Whole white alabastrum(diploid) 3	79.598
	CNS0095597	Whole white alabastrum(diploid) 4	94.166
	CNS0095598	Silvery flower (diploied) 1	3.508
	CNS0095599	Silvery flower (diploied) 2	11.930
	CNS0095600	Silvery flower (diploied) 3	2.682
	CNS0095601	Golden flower (diploid) 1	3.915
	CNS0095602	Golden flower (diploid) 2	2.509
	CNS0095603	Golden flower (diploid) 3	2.074
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.620
	CNS0095605	Slightly white alabastrum(tetraploid) 2	59.802
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.274
	CNS0095607	Whole white alabastrum(tetraploid) 1	101.581
	CNS0095608	Whole white alabastrum(tetraploid) 2	121.711
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.001
	CNS0095610	Silvery flower (tetraploid) 1	2.809
	CNS0095611	Silvery flower (tetraploid) 2	7.558
	CNS0095612	Silvery flower (tetraploid) 3	19.920
	CNS0095613	Golden flower (tetraploid) 1	2.821
	CNS0095614	Golden flower (tetraploid) 2	1.693
	CNS0095615	Golden flower (tetraploid) 3	6.478
CRA001975	CRR073297	Stem 1	11.410
	CRR073298	Stem 2	11.432
	CRR073299	Stem 3	5.080
	CRR073300	Leaf 1	41.577
	CRR073301	Leaf 2	26.962
	CRR073302	Leaf 3	14.451
	CRR073303	Juvenile bud 1	37.654
	CRR073304	Juvenile bud 2	22.109
	CRR073305	Juvenile bud 3	7.496
	CRR073306	Third green 1	12.205
	CRR073307	Third green 2	10.672
	CRR073308	Third green 3	12.589
	CRR073309	Second white 1	1.166
	CRR073310	Second white 2	3.152
	CRR073311	Second white 3	4.677
	CRR073312	Silver flowering 1	16.434
	CRR073313	Silver flowering 2	18.980
	CRR073314	Silver flowering 3	9.477
	CRR073315	Gold flowering 1	8.599
	CRR073316	Gold flowering 2	3.368
	CRR073317	Gold flowering 3	1.286
	CRR073318	Tawny withering 1	15.828
	CRR073319	Tawny withering 2	13.842
	CRR073320	Tawny withering 3	15.514