Gene detail

Detail information of GWHGAAZE016654

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006473736.1	PREDICTED: probable alpha-amylase 2-like [Citrus sinensis]
Swissprot	tr\|Q8LFG1\|AMY2_ARATH	Probable alpha-amylase 2
trEMBL	tr\|A0A067HB02\|A0A067HB02_CITSI	Alpha-amylase {ECO:0000256\|RuleBase:RU361134}
TAIR10	AT1G76130.1	alpha-amylase-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80280566	80283651	+
GWHAAZE00000004	mRNA	80280566	80283651	+
GWHAAZE00000004	exon	80280566	80280599	+
GWHAAZE00000004	exon	80280911	80280948	+
GWHAAZE00000004	exon	80281137	80281263	+
GWHAAZE00000004	exon	80281393	80281619	+
GWHAAZE00000004	exon	80281755	80281900	+
GWHAAZE00000004	exon	80282007	80282119	+
GWHAAZE00000004	exon	80282225	80282313	+
GWHAAZE00000004	exon	80282549	80282671	+
GWHAAZE00000004	exon	80282794	80282829	+
GWHAAZE00000004	exon	80283261	80283359	+
GWHAAZE00000004	exon	80283460	80283651	+
GWHAAZE00000004	CDS	80280566	80280599	+
GWHAAZE00000004	CDS	80280911	80280948	+
GWHAAZE00000004	CDS	80281137	80281263	+
GWHAAZE00000004	CDS	80281393	80281619	+
GWHAAZE00000004	CDS	80281755	80281900	+
GWHAAZE00000004	CDS	80282007	80282119	+
GWHAAZE00000004	CDS	80282225	80282313	+
GWHAAZE00000004	CDS	80282549	80282671	+
GWHAAZE00000004	CDS	80282794	80282829	+
GWHAAZE00000004	CDS	80283261	80283359	+
GWHAAZE00000004	CDS	80283460	80283651	+

Transcript Sequence
>GWHTAAZE016674 GGAGTTGACGATCGCGTCCAGCAAACTGATCCTGTGGCAGTAATACGTAATGGAAAAGAAATCTTATTACAGGCTTTCAATTGGGAGTCTCACAAACGTAATTGGTGGAGAAATTTAGATAACAAGATTCCCGACATAGCCAAGTCTGGCTTTACATCAGCATGGCTGCCACCGGCAACTCATTCTTTTTCACCTGAAGGTTACCTTCCACAGAACCTTTACTCCCTCAATTCGTCATATGGGTCTGAGCACCAGTTAAAAGCTTTACTTCATAAAATGAAGCAACACAAAGTTAGACCAATGGCTGATATCGTCATTAATCATCGTATCGGGACTACCCAAGGGCATGGCGGAAAGTACAACCGTTATGATGGAATCCCGTTATCCTGGGATGAACGTGCTGTTACATCTTGTACCGGTGGATTGGGTAATCGGAGCACTGGGGAAAACTTCAATGGGGTCCCTAATGTTGATCATACACAAGACTTTGTTCGTAAGGATATTATTGAGTGGCTGAGATGGTTGCGCTACAATGTTGGCTTTCAAGATTTCCGTTTCGATTTTGCTAGAGGTTATTCAGCCAAGTATGTGAAAGAATACATTGAAGGTGCTAAGCCGATTTTTTGTGTTGGGGAGTACTGGGACTCTTGCAACTACAACGGTAACGGCTTGAATTACAACCAAGATAGCCACAGGCAGCGGATAGTCAATTGGATTGATGGCACATGCCAGCTTTCAACTGCGTTTGACTTCACAACAAAGGGAATTCTTCAGCAAGCTGTTAAGGGGGAACTATGGCGCTTGCGCGATCCTCAGGGAAAGCCACCAGGTGTGATGGGATGGTGGCCTTCTAGGGCTGTCACTTTCCTCGATAATCATGATACCGGTTCAACACAGGCACATTGGCCTTTTCCGGGACATCATGTTATGGAGGGCTACGCGTATATACTGACACATCCGGGGATACCGTCAGTTTTCTATGACCATTTCTATGATTGGGGCGATTCCATTCACAACCAAATCGTGAAGCTGATGGATATTAGGAAGCGTCAGGATATAGTAAGCCGGTCATCAATCAAGATTATTGAGGCCCAGCCAAATCTATATGCGGCTGTGATTGGAGACAAAGTGTGCATGAAGATTGGAGATGGTTCGTGGTGCCCTCCTGGCCGGGAGTGGACACTTGCCACTAGTGGACACAGATATGCAGTGTGGCACAAGTAG

Network for GWHGAAZE016654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00128.25	Alpha-amylase	41	298	1.40E-11
PF07821.13	Alpha-amyl_C2	350	406	2.80E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004556	molecular_function	alpha-amylase activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.470
	SRR3591706	second leaf	4.735
	SRR3591707	mature leaf	11.495
	SRR3591708	Shoot apex	3.929
	SRR3591709	Stem	45.643
	SRR3591710	White floral bud	28.594
	SRR3591711	White flower	11.008
	SRR3591712	Green floral bud	24.574
	SRR3591713	Yellow flower	5.707
SRP173429	SRR8316895	Juvenile bud stage	20.233
	SRR8316896	Juvenile bud stage	19.433
	SRR8316897	Juvenile bud stage	8.432
	SRR8316894	Third green stage	11.847
	SRR8316900	Third green stage	49.840
	SRR8316901	Third green stage	43.454
	SRR8316898	Complete white stage	37.409
	SRR8316899	Complete white stage	152.209
	SRR8316903	Complete white stage	60.857
	SRR8316902	Silver flowering stage	51.042
	SRR8316904	Silver flowering stage	47.671
	SRR8316905	Silver flowering stage	13.940
	SRR8316906	Gold flowering stage	38.481
	SRR8316907	Gold flowering stage	31.709
	SRR8316908	Gold flowering stage	18.322
SRP132670	SRR6706286	Control	19.190
	SRR6706287	Light intensity 50%	34.218
	SRR6706288	Light intensity 20%	35.058
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	96.219
	CNS0095593	Slightly white alabastrum(diploid) 2	151.930
	CNS0095594	Slightly white alabastrum(diploid) 3	95.147
	CNS0095595	Whole white alabastrum(diploid) 2	117.734
	CNS0095596	Whole white alabastrum(diploid) 3	62.308
	CNS0095597	Whole white alabastrum(diploid) 4	110.598
	CNS0095598	Silvery flower (diploied) 1	20.713
	CNS0095599	Silvery flower (diploied) 2	27.868
	CNS0095600	Silvery flower (diploied) 3	16.178
	CNS0095601	Golden flower (diploid) 1	5.482
	CNS0095602	Golden flower (diploid) 2	2.997
	CNS0095603	Golden flower (diploid) 3	2.822
	CNS0095604	Slightly white alabastrum(tetraploid) 1	76.894
	CNS0095605	Slightly white alabastrum(tetraploid) 2	93.238
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	115.442
	CNS0095608	Whole white alabastrum(tetraploid) 2	116.388
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.462
	CNS0095610	Silvery flower (tetraploid) 1	50.374
	CNS0095611	Silvery flower (tetraploid) 2	3.845
	CNS0095612	Silvery flower (tetraploid) 3	23.503
	CNS0095613	Golden flower (tetraploid) 1	7.468
	CNS0095614	Golden flower (tetraploid) 2	5.545
	CNS0095615	Golden flower (tetraploid) 3	2.765
CRA001975	CRR073297	Stem 1	13.050
	CRR073298	Stem 2	14.527
	CRR073299	Stem 3	15.664
	CRR073300	Leaf 1	58.697
	CRR073301	Leaf 2	63.116
	CRR073302	Leaf 3	46.189
	CRR073303	Juvenile bud 1	144.541
	CRR073304	Juvenile bud 2	47.346
	CRR073305	Juvenile bud 3	130.720
	CRR073306	Third green 1	34.147
	CRR073307	Third green 2	47.414
	CRR073308	Third green 3	47.934
	CRR073309	Second white 1	7.463
	CRR073310	Second white 2	9.245
	CRR073311	Second white 3	5.991
	CRR073312	Silver flowering 1	4.122
	CRR073313	Silver flowering 2	2.884
	CRR073314	Silver flowering 3	1.724
	CRR073315	Gold flowering 1	59.610
	CRR073316	Gold flowering 2	62.018
	CRR073317	Gold flowering 3	25.090
	CRR073318	Tawny withering 1	177.538
	CRR073319	Tawny withering 2	252.065
	CRR073320	Tawny withering 3	220.455