Gene detail

Detail information of GWHGAAZE016657

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP36844.1	0	hypothetical protein JCGZ_08135 [Jatropha curcas]
Swissprot	tr\|Q9FH04\|ADHL7_ARATH	0	Alcohol dehydrogenase-like 7
trEMBL	tr\|A0A067KYC0\|A0A067KYC0_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP36844.1}
TAIR10	AT5G42250.1	8E-152	Zinc-binding alcohol dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80364195	80369919	+
GWHAAZE00000004	mRNA	80364195	80369919	+
GWHAAZE00000004	exon	80364195	80364455	+
GWHAAZE00000004	exon	80367049	80367185	+
GWHAAZE00000004	exon	80367482	80367806	+
GWHAAZE00000004	exon	80367971	80368053	+
GWHAAZE00000004	exon	80368149	80368224	+
GWHAAZE00000004	exon	80368374	80368438	+
GWHAAZE00000004	exon	80368914	80369009	+
GWHAAZE00000004	exon	80369488	80369652	+
GWHAAZE00000004	exon	80369803	80369919	+
GWHAAZE00000004	five_prime_UTR	80364195	80364403	+
GWHAAZE00000004	CDS	80364404	80364455	+
GWHAAZE00000004	CDS	80367049	80367185	+
GWHAAZE00000004	CDS	80367482	80367806	+
GWHAAZE00000004	CDS	80367971	80368053	+
GWHAAZE00000004	CDS	80368149	80368224	+
GWHAAZE00000004	CDS	80368374	80368438	+
GWHAAZE00000004	CDS	80368914	80369009	+
GWHAAZE00000004	CDS	80369488	80369652	+
GWHAAZE00000004	CDS	80369803	80369919	+

Transcript Sequence
>GWHTAAZE016677 GAGGTCCCGTCTAATTTGGGGCATATAATCGAAACACCACATACGTAAATCAAGAGACAACAGAGAGAGTTGCCTTTACAAACACGCATTTCCATTTCCAGGCGGTTCATTGTGACCATAGAAATCAGATAAAGCTCCAAAATTGTACCAGTGTGACTATAAAAACGAGATATGAAGCACCAAGATTTCCACACTCACTTGCATAATTAATGGCGGACAATCAGTCAAGCACAACTGCTGGAAAGCCCATTCGTTGCAGAGCGGCGGTTGCTCGTGGACCAGGGGAGCCACTGGTGATTGAGGAAGTGATTGTGGCACCTCCGAATCCTCACGAAGTTCGAATCCGTATCATATGCACTTCCCTTTGCTATAGTGACATCACCTTCTGGAAAATGAAAGATTGTGGAAAGTGTGGGGAGGAAGTGGACGAGTTAAATGAAGGAGATACAGTCATCCCACAGTTCTTGTCGGATTGTGGAGACTGTGTAGATTGCAGGTCCAAGAAGAGCAACCTCTGTTTGAAGTTCCCATTTCAGGTCTCTCCTTGGACACACAGAGACGAGACGAGCCGATTCACTGACCTTAATGGAGAGACTCTGTACCACTTCTTGTATGTTTCAAGCTTTAGCGAGTATACAGTGGTGGATATTGTTCATGTAACTAAAATCGATCCCTCAATCCCGCCAAATAGAGCGTGCCTCCTGAGCTGTGGAGTGTCAACTGGGGTAGGTGCAGCTTGGAAAACAGCCAAGGTGAAAGCAGGATCTACTGCTGTTGTATTTGGACTGGGAGCAATTGGATTAGCAGTTGTAGAGGGAGCAAGGCTATGTGGAGCTAAAAGAATTATCGGTGTGGACGTGAACCCAAACAAATTTGAAATAGGGAAAAAGCTTGGTGTCACCGATTTTGTCAACTCTGGTAGCTGTGGGAATCAGACTCTGAGCCAGGTAATAAACGAGATGACTGATGGGGGTGCAGACTATTGCTTCGAATGTGTTGGTTTGTTATCCTTGGTGAATGAAGCATTCGCTTGCTGCCGAAAGGGATGGGGAAAGACAGTTGTGGTGGGGCTGCACAAGCTAGGATCAAAGTTGAGCTTCGATTCCTTTGAGGTCCTTCATAGTGGGAAATCTATTAGGGGATCCTTCTATGGAGGTCTCAAACCAAAATCTGACATTCCCATCCTCGCAAAACGATATATGGACAAGGAACTTAATTTGGATGAATTTGTGACACACGAGGTTAGTTTTGAAGACATCAACAATGCTTTTGATTTGCTTACGGGTGGGAAGTGTGTCCGATGTGTGATTTGGATGAACAAATAA

Network for GWHGAAZE016657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	40	152	4.50E-09
PF00107.27	ADH_zinc_N	195	316	1.20E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00121	frmA, ADH5, adhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Degradation of aromatic compounds	map01220
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Fatty acid degradation	map00071
		Tyrosine metabolism	map00350
		Retinol metabolism	map00830
		Chloroalkane and chloroalkene degradation	map00625
		Naphthalene degradation	map00626
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.500
	SRR3591706	second leaf	29.257
	SRR3591707	mature leaf	46.027
	SRR3591708	Shoot apex	5.148
	SRR3591709	Stem	2.277
	SRR3591710	White floral bud	9.067
	SRR3591711	White flower	13.111
	SRR3591712	Green floral bud	4.089
	SRR3591713	Yellow flower	11.586
SRP173429	SRR8316895	Juvenile bud stage	6.496
	SRR8316896	Juvenile bud stage	10.370
	SRR8316897	Juvenile bud stage	5.458
	SRR8316894	Third green stage	4.233
	SRR8316900	Third green stage	9.255
	SRR8316901	Third green stage	11.330
	SRR8316898	Complete white stage	36.398
	SRR8316899	Complete white stage	25.693
	SRR8316903	Complete white stage	48.559
	SRR8316902	Silver flowering stage	13.023
	SRR8316904	Silver flowering stage	13.816
	SRR8316905	Silver flowering stage	8.269
	SRR8316906	Gold flowering stage	19.044
	SRR8316907	Gold flowering stage	15.811
	SRR8316908	Gold flowering stage	13.503
SRP132670	SRR6706286	Control	27.164
	SRR6706287	Light intensity 50%	22.026
	SRR6706288	Light intensity 20%	18.950
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.534
	CNS0095593	Slightly white alabastrum(diploid) 2	11.732
	CNS0095594	Slightly white alabastrum(diploid) 3	20.081
	CNS0095595	Whole white alabastrum(diploid) 2	12.001
	CNS0095596	Whole white alabastrum(diploid) 3	11.112
	CNS0095597	Whole white alabastrum(diploid) 4	13.752
	CNS0095598	Silvery flower (diploied) 1	184.111
	CNS0095599	Silvery flower (diploied) 2	157.037
	CNS0095600	Silvery flower (diploied) 3	99.102
	CNS0095601	Golden flower (diploid) 1	125.524
	CNS0095602	Golden flower (diploid) 2	93.822
	CNS0095603	Golden flower (diploid) 3	88.881
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.776
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.840
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.244
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.407
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.764
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.701
	CNS0095610	Silvery flower (tetraploid) 1	185.431
	CNS0095611	Silvery flower (tetraploid) 2	266.045
	CNS0095612	Silvery flower (tetraploid) 3	193.324
	CNS0095613	Golden flower (tetraploid) 1	83.941
	CNS0095614	Golden flower (tetraploid) 2	315.287
	CNS0095615	Golden flower (tetraploid) 3	105.927
CRA001975	CRR073297	Stem 1	11.391
	CRR073298	Stem 2	9.450
	CRR073299	Stem 3	7.940
	CRR073300	Leaf 1	8.435
	CRR073301	Leaf 2	9.683
	CRR073302	Leaf 3	5.659
	CRR073303	Juvenile bud 1	9.446
	CRR073304	Juvenile bud 2	7.382
	CRR073305	Juvenile bud 3	9.351
	CRR073306	Third green 1	4.251
	CRR073307	Third green 2	3.668
	CRR073308	Third green 3	3.543
	CRR073309	Second white 1	16.514
	CRR073310	Second white 2	11.492
	CRR073311	Second white 3	8.349
	CRR073312	Silver flowering 1	8.022
	CRR073313	Silver flowering 2	7.261
	CRR073314	Silver flowering 3	7.134
	CRR073315	Gold flowering 1	10.913
	CRR073316	Gold flowering 2	12.679
	CRR073317	Gold flowering 3	8.219
	CRR073318	Tawny withering 1	3.547
	CRR073319	Tawny withering 2	5.575
	CRR073320	Tawny withering 3	2.022