Gene detail

Detail information of GWHGAAZE016658

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009774475.1	1.4497E-83	PREDICTED: alcohol dehydrogenase-like 7 [Nicotiana sylvestris]
Swissprot	tr\|Q9FH04\|ADHL7_ARATH	2E-71	Alcohol dehydrogenase-like 7
trEMBL	tr\|M1CVH9\|M1CVH9_SOLTU	3E-86	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400075617}
TAIR10	AT5G42250.1	2E-59	Zinc-binding alcohol dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80378455	80381083	+
GWHAAZE00000004	mRNA	80378455	80381083	+
GWHAAZE00000004	exon	80378455	80378890	+
GWHAAZE00000004	exon	80379015	80379064	+
GWHAAZE00000004	exon	80379675	80379770	+
GWHAAZE00000004	exon	80380609	80380773	+
GWHAAZE00000004	exon	80380943	80381083	+
GWHAAZE00000004	five_prime_UTR	80378455	80378778	+
GWHAAZE00000004	CDS	80378779	80378890	+
GWHAAZE00000004	CDS	80379015	80379064	+
GWHAAZE00000004	CDS	80379675	80379770	+
GWHAAZE00000004	CDS	80380609	80380773	+
GWHAAZE00000004	CDS	80380943	80381083	+

Transcript Sequence
>GWHTAAZE016678 ACTGATACGACTATACGAGTATATTTGAGTGCTGTTATATATGTATATAAATTTGAATGTATCACATTATATGATACCAGATTAAGCATACACATGTTCTTGCTCAGGATTTTGAAATAATTTAATACATCACTAAACACTAGTTGGGCTTTCAGGAGTGATTGCTGCATGAAAAACAGCGACCGTGGAAACATAATCCACTGTTGCTATATTTGGGCTGGGACTAATTGGATTAGCAGTTTGATCTTGAAGCTATTGTTATATGAATTATTATTTTATTTAATTAAAGAGATTGATGTTTGATAGGTTTGCGGGGAGGGCATAATGTTAACGATCTGTTTTTGTTTCCCAAATAAAAAGGTTGCAGAGGGAGCAAGGTTATGTGGTGCTAAAACTATTATTGGTGTGGATGTGAACTCAGACAGATACATAATAGTCACTGATTTTATCAACTCTAATAGCAGTGGGAGCAAAATTGTGAGCCAGGTAATAAACGAGATGACTGATGGGGGAGCAGACTACTGCTTTGAATGTGTTGGCTTGTCATCCTTGGTAGCTGAAGCCTATGCTTGCTGCCGAAAGGGATGGGGAAAGGTAGTTGTGCTGGGAGTGGACAAGCCAGGGTCAGAGTTGAACTTCAGTTCTTTTGAGGTCCTTCATCACGGCAAAACCATTACAAGGAAACTGTTTGGAGGTCTCAAGCCTAAATATGATATTCCTATCATAGTCAAACGATATATGGACAAGTGCTTTGCCTTTGAGCGCTTTCAAGAACTGCAATTGGACGAATTTGTTACACACGAGGTGAGTTTTGAAGAAATCAACAAAGCTTTCGATTTACTTTTAGAACGAAAAAGCCTCAAATGTGTGATTTGGATGGACAAATGA

Network for GWHGAAZE016658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00107.27	ADH_zinc_N	15	125	4.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00121	frmA, ADH5, adhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Degradation of aromatic compounds	map01220
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Fatty acid degradation	map00071
		Tyrosine metabolism	map00350
		Retinol metabolism	map00830
		Chloroalkane and chloroalkene degradation	map00625
		Naphthalene degradation	map00626
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.891
	SRR3591706	second leaf	5.736
	SRR3591707	mature leaf	1.786
	SRR3591708	Shoot apex	6.142
	SRR3591709	Stem	3.005
	SRR3591710	White floral bud	1.346
	SRR3591711	White flower	0.773
	SRR3591712	Green floral bud	3.774
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	10.695
	SRR8316896	Juvenile bud stage	13.998
	SRR8316897	Juvenile bud stage	15.063
	SRR8316894	Third green stage	5.771
	SRR8316900	Third green stage	9.400
	SRR8316901	Third green stage	11.221
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	4.865
	SRR8316903	Complete white stage	1.565
	SRR8316902	Silver flowering stage	0.215
	SRR8316904	Silver flowering stage	0.490
	SRR8316905	Silver flowering stage	0.265
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.006
	SRR8316908	Gold flowering stage	0.372
SRP132670	SRR6706286	Control	3.677
	SRR6706287	Light intensity 50%	5.620
	SRR6706288	Light intensity 20%	6.865
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.846
	CNS0095593	Slightly white alabastrum(diploid) 2	10.509
	CNS0095594	Slightly white alabastrum(diploid) 3	12.424
	CNS0095595	Whole white alabastrum(diploid) 2	7.750
	CNS0095596	Whole white alabastrum(diploid) 3	6.347
	CNS0095597	Whole white alabastrum(diploid) 4	7.012
	CNS0095598	Silvery flower (diploied) 1	6.893
	CNS0095599	Silvery flower (diploied) 2	7.054
	CNS0095600	Silvery flower (diploied) 3	0.972
	CNS0095601	Golden flower (diploid) 1	7.052
	CNS0095602	Golden flower (diploid) 2	2.163
	CNS0095603	Golden flower (diploid) 3	1.426
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.734
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.765
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.144
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.337
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.027
	CNS0095610	Silvery flower (tetraploid) 1	0.501
	CNS0095611	Silvery flower (tetraploid) 2	1.609
	CNS0095612	Silvery flower (tetraploid) 3	0.454
	CNS0095613	Golden flower (tetraploid) 1	0.292
	CNS0095614	Golden flower (tetraploid) 2	0.632
	CNS0095615	Golden flower (tetraploid) 3	0.121
CRA001975	CRR073297	Stem 1	6.498
	CRR073298	Stem 2	5.843
	CRR073299	Stem 3	0.622
	CRR073300	Leaf 1	5.989
	CRR073301	Leaf 2	7.229
	CRR073302	Leaf 3	1.328
	CRR073303	Juvenile bud 1	0.526
	CRR073304	Juvenile bud 2	0.090
	CRR073305	Juvenile bud 3	0.563
	CRR073306	Third green 1	0.070
	CRR073307	Third green 2	0.282
	CRR073308	Third green 3	0.082
	CRR073309	Second white 1	0.007
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.004
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.141
	CRR073316	Gold flowering 2	0.268
	CRR073317	Gold flowering 3	0.189
	CRR073318	Tawny withering 1	0.921
	CRR073319	Tawny withering 2	2.368
	CRR073320	Tawny withering 3	1.332