Gene detail

Detail information of GWHGAAZE016668

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008237989.1	PREDICTED: catalase isozyme 1-like [Prunus mume]
Swissprot	tr\|P49317\|CATA3_NICPL	Catalase isozyme 3
trEMBL	tr\|M5WY75\|M5WY75_PRUPE	Catalase {ECO:0000256\|RuleBase:RU000498}
TAIR10	AT4G35090.1	catalase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80629552	80633138	+
GWHAAZE00000004	mRNA	80629552	80633138	+
GWHAAZE00000004	exon	80629552	80629657	+
GWHAAZE00000004	exon	80630348	80630625	+
GWHAAZE00000004	exon	80630703	80630774	+
GWHAAZE00000004	exon	80630962	80631756	+
GWHAAZE00000004	exon	80631904	80631993	+
GWHAAZE00000004	exon	80632697	80632764	+
GWHAAZE00000004	exon	80632860	80632953	+
GWHAAZE00000004	exon	80633079	80633138	+
GWHAAZE00000004	CDS	80629552	80629657	+
GWHAAZE00000004	CDS	80630348	80630625	+
GWHAAZE00000004	CDS	80630703	80630774	+
GWHAAZE00000004	CDS	80630962	80631756	+
GWHAAZE00000004	CDS	80631904	80631993	+
GWHAAZE00000004	CDS	80632697	80632764	+
GWHAAZE00000004	CDS	80632860	80632953	+
GWHAAZE00000004	CDS	80633079	80633138	+

Transcript Sequence
>GWHTAAZE016688 ATGTTACAGTTCCGCCCTTCAAGCTCTTACAATTCCCCCTTTTGGACAACAAACACTGGCGTTCCAGTTTACAACAATGAATCATCATTGACTGTTGGAACTAGAGGTCCTGTTCTCCTCGAGGATTATCATTTGGTGGAGAAACTAGCTACTTTTGATCGTGAAAGGATCCCTGAACGTGTTGTCCATGCAAGGGGTGCTAGTGCCAAGGGTTTCTTTGAGGTCACCCATGATATTTCTCACCTCACTTGTGCTGATTTCCTTCGAGCCCCTGGAGTCCAGACACCCGTCATTGTCCGTTTCTCCACTGTTATCCATGAGAGAGGTAGTCCTGAAACCCTTCGTGACCCCCGAGGTTTTGCAGTGAAGTTCTACACCAGAGAGATTGTTTTCTTTCTTTTGACACCAGTTCTTGTAGGCTATGCTGTTAAGTCTTGCAGATTATGCTGTTTTCATCTTTTCCTTTATGCGCAGGGTAACTTTGATTTGGTGGGAAACAATTTCCCTGTTTTCTTCGTCCGAGATGCGATGAACTTCCCAGACGCGATACGTGCTTTCAAACCCAATCCCAAGTCCCACATTCAGGAGAACTGGAGAATCCTCGATTACTTCTCTCACCGCCCAGAGAGTTTAAGCACGTTCGCTTTCTTCTATGATGACTTGGGTGTCCCACAAGATTACAGGCATATGGAAGGCTCTAGTGTTCACGCTTACAAACTGATTAACAAAATTGGGAAAGTACACTATGTGATGTTTCACTGGAAACCTACTTGTGGAGTCAAGTGTTTGTTGGAAGACGAAGCCATAAAGGTTGGAGGAGCTAATCACAGCCACGCCACCCAAGATCTCTATGACTCGATTGGTGCAGGCAACTATCCCGAGTGGAAACTTTTCATGCAGATAATGGATCCGGATCACGAGGACAGATTTGATTTTGACCCACTTGATGTAACCAAAATCTGGCCCGAGGATATCTTGCCCCTCCAGCCGGTTGGCCGATTGGTCTTGAATAAGAACATCGATAACTTTTTTGCGGAAAACGAACAGCTTGCATTCAATCCTGGTTCTGTTGTTCCTGGTGTGTACTATTCAGAAGATAAGCTCCTCCAGACTAGGATATTCGCATATGGTGATACTCAGAGGCACCGGCTTGGACCGAACTATCTGCAGCTGCCTGTTAATGCACCAAAGTGTGCCCATCACAACAATCACCATGAAGGGTTCATGAACATCATGCACAGGGATGAGGAGGTCAATTACTTCCCGTCGAGGTTTGATACTGTTCGTACTGCTGATAAATACCCCATTCCTCCGCAAATCATGACTGGAAAGCGTGAAAGGCGCGTCATTGACAAAGAGAACAACTTTAAACAACCAGGAGAGATGTACCGATCCTTTGCACCCGACAGGCAAGAGCGATTCATCTGCAGATGGGTTAATGCTTTATCCGACCCGCGTGTCACCTACGAGATCCGCAGTATTTGGATCTCGTACTGGACCCAGGCTGACGGGTCTCTGGGTCAGAAGCTAGCGTCTCGCCTTAATGTGAGGCCAAGCATTTAA

Network for GWHGAAZE016668

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00199.20	Catalase	16	128	4.60E-50
PF00199.20	Catalase	157	426	6.90E-110
PF06628.13	Catalase-rel	450	514	1.20E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03781	katE, CAT, catB, srpA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carbon metabolism	map01200
		Glyoxylate and dicarboxylate metabolism	map00630
		Tryptophan metabolism	map00380
		MAPK signaling pathway - plant	map04016
		MAPK signaling pathway - yeast	map04011
		FoxO signaling pathway	map04068
		Peroxisome	map04146
		Longevity regulating pathway	map04211
		Longevity regulating pathway - worm	map04212
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0020037	molecular_function	heme binding
GO:0004096	molecular_function	catalase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2555.404
	SRR3591706	second leaf	940.655
	SRR3591707	mature leaf	2459.463
	SRR3591708	Shoot apex	809.983
	SRR3591709	Stem	3373.314
	SRR3591710	White floral bud	1029.771
	SRR3591711	White flower	1012.514
	SRR3591712	Green floral bud	551.842
	SRR3591713	Yellow flower	595.998
SRP173429	SRR8316895	Juvenile bud stage	357.715
	SRR8316896	Juvenile bud stage	342.715
	SRR8316897	Juvenile bud stage	140.094
	SRR8316894	Third green stage	141.495
	SRR8316900	Third green stage	253.591
	SRR8316901	Third green stage	297.696
	SRR8316898	Complete white stage	236.237
	SRR8316899	Complete white stage	1264.926
	SRR8316903	Complete white stage	444.081
	SRR8316902	Silver flowering stage	90.895
	SRR8316904	Silver flowering stage	134.641
	SRR8316905	Silver flowering stage	67.937
	SRR8316906	Gold flowering stage	67.830
	SRR8316907	Gold flowering stage	211.523
	SRR8316908	Gold flowering stage	114.172
SRP132670	SRR6706286	Control	872.925
	SRR6706287	Light intensity 50%	605.746
	SRR6706288	Light intensity 20%	541.752
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	327.668
	CNS0095593	Slightly white alabastrum(diploid) 2	404.799
	CNS0095594	Slightly white alabastrum(diploid) 3	334.421
	CNS0095595	Whole white alabastrum(diploid) 2	275.564
	CNS0095596	Whole white alabastrum(diploid) 3	166.974
	CNS0095597	Whole white alabastrum(diploid) 4	275.364
	CNS0095598	Silvery flower (diploied) 1	1949.183
	CNS0095599	Silvery flower (diploied) 2	1727.938
	CNS0095600	Silvery flower (diploied) 3	873.136
	CNS0095601	Golden flower (diploid) 1	2050.008
	CNS0095602	Golden flower (diploid) 2	2202.666
	CNS0095603	Golden flower (diploid) 3	2114.283
	CNS0095604	Slightly white alabastrum(tetraploid) 1	320.724
	CNS0095605	Slightly white alabastrum(tetraploid) 2	270.861
	CNS0095606	Slightly white alabastrum(tetraploid) 3	587.190
	CNS0095607	Whole white alabastrum(tetraploid) 1	261.573
	CNS0095608	Whole white alabastrum(tetraploid) 2	218.182
	CNS0095609	Whole white alabastrum(tetraploid) 3	189.431
	CNS0095610	Silvery flower (tetraploid) 1	507.689
	CNS0095611	Silvery flower (tetraploid) 2	691.272
	CNS0095612	Silvery flower (tetraploid) 3	227.621
	CNS0095613	Golden flower (tetraploid) 1	395.648
	CNS0095614	Golden flower (tetraploid) 2	621.940
	CNS0095615	Golden flower (tetraploid) 3	120.947
CRA001975	CRR073297	Stem 1	417.714
	CRR073298	Stem 2	369.147
	CRR073299	Stem 3	480.455
	CRR073300	Leaf 1	337.144
	CRR073301	Leaf 2	396.843
	CRR073302	Leaf 3	348.569
	CRR073303	Juvenile bud 1	620.650
	CRR073304	Juvenile bud 2	355.183
	CRR073305	Juvenile bud 3	1519.465
	CRR073306	Third green 1	185.961
	CRR073307	Third green 2	347.216
	CRR073308	Third green 3	338.022
	CRR073309	Second white 1	83.896
	CRR073310	Second white 2	31.552
	CRR073311	Second white 3	23.062
	CRR073312	Silver flowering 1	14.201
	CRR073313	Silver flowering 2	65.422
	CRR073314	Silver flowering 3	61.854
	CRR073315	Gold flowering 1	320.906
	CRR073316	Gold flowering 2	531.023
	CRR073317	Gold flowering 3	995.214
	CRR073318	Tawny withering 1	3591.791
	CRR073319	Tawny withering 2	2661.386
	CRR073320	Tawny withering 3	1430.912