Gene detail

Detail information of GWHGAAZE016669

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011074088.1	PREDICTED: protein NLP5-like [Sesamum indicum]
Swissprot	tr\|Q9SFW8\|NLP5_ARATH	Protein NLP5
trEMBL	tr\|M1ALT3\|M1ALT3_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400025657}
TAIR10	AT1G76350.1	Plant regulator RWP-RK family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80639874	80643332	+
GWHAAZE00000004	mRNA	80639874	80643332	+
GWHAAZE00000004	exon	80639874	80640773	+
GWHAAZE00000004	exon	80641023	80641070	+
GWHAAZE00000004	exon	80641166	80641936	+
GWHAAZE00000004	exon	80642020	80642062	+
GWHAAZE00000004	exon	80642437	80643332	+
GWHAAZE00000004	CDS	80639874	80640773	+
GWHAAZE00000004	CDS	80641023	80641070	+
GWHAAZE00000004	CDS	80641166	80641936	+
GWHAAZE00000004	CDS	80642020	80642062	+
GWHAAZE00000004	CDS	80642437	80643332	+

Transcript Sequence
>GWHTAAZE016689 ATGGATGATAGCAATTTCCCTCCAAACACCATATTGGATACTCCAACTGATTCCATTATGGATTTGGATTTCATGGATGAACTCTTATTAGAAGGATGTTGGTTAGAAGCAACTGATGGATCTGAATTCTTTAATATTACTACTCCCTCCACTACCAATTCTCTCTTTGATCCTTCATTTTCATGGCCCACTTTCGAACCTAACAACGACGAATCAAATGAGAATTTACCTCAAAAAGCCAGTCAAGAAGAGAGACAAATGTCTTCTTTCCCTGATAATTTGTCCATTAGTCAATCACAAAACACCCAAAATTCTTCTAAAGTTCATTCTATCGATGAGAGCATGGTTAATGCCGACAATTATTTAGTTGATGGCACTGAGCTAAGGAGAAGGTGGTGGATTGGACCAAGCGGTAATCATCGCCCCGCATTGTCTGTAATGGAAAGATTAATTCAGGCACTTGGGTATGTAAAAGATTGCAAAAGAGATAAAGATGTCCTTATTCAAATATGGGTGCCTGTTAACAGAGGCGATAGACGAGTTCTAAGTACCAGCAATCAACCTTTTTCGCTCGACATTAACTGTCCAAGGCTAGCAAATTATAGAAAAATTTCTGTGAACTATCAGTTCCCTGCTGAGGAGGATTCAAAGGAGATTGTGGGAATGCCTGGCCGGGTTTTCATGGGTAAAGTTCCTGAGTGGACCCCAGATGTTCGGTTCTTTAGAAGGGAAGAATACCCACGAGTTGGTCACGCTTTGCAGTACGATGTTCGTGGAACCCTAGCCGTTCCAGTTTTTGAGCAAGGGAGCAGCAATTGCTTAGGTGTTATTGAAGTTGTAATGACCACTCAAAAGGTTAATTACGGTCAAGAGCTTGAATTGGTTTGCAAAGCTCTTCGGGCTGTTGACCTGAGGAGTTCTGAGATGTCGAGTATTCCAAATGACAAGTTCAATGATGGCTCCTATCAAGCTTCATTACCTGAGATTCTAGAGCTTTTACGAGCTTCGTGTGAAACATTTAAACTTCCGTTAGCTCAAACATGGGTTCCGTGCATCCAACAAGGTAAAGGTGGGTGCCGCCACTCTGATGAGAACTTAGGTAACTGTGTCTCCACCGTAGATTCAGCATGCTATGTGGCGGACCCTAGTATTATGCCTTTTCAAGAAGCTTGCTCTGAGCACCACTTGTTAAAAGGCCAAGGCGTTGCTGGAAGTGCTTTTGTAACTAACCAGCCATGTTTTTCACCGGATGTGACCTCTTATAGCAAGACTGAATATCCCCTTTCACACCACGCAAGGATGTTCGGTTTGCGTGCTGCTGTTGCAATACGCCTACGGAGCATCTTAGCTACTGCAGCCGACTTTGTTTTGGAGTTCTTCTTGCCCGTTGATTGCACAGATTCTGAAGAGCAGAGGAAAATGCTCACTTTGTTGTCTGTCATTATACAAAAAGTTTGCCGGAGTTTAAGGATTGTCACCGAGGAAGAGTTGAATGAAGAAACTGTTGTATCAAGAGAGGACTGTACTCCTCAAGATAGGTGTCTTTTTGAAGTTCCACACTCCAGTGGCAAGGCCCGAGAGCGTGAAAATGTTGTTTTGTTATCAAGGACTGGAAAGTCAAAGGAAGAGGTGACCGGAAAAGGCTTGGAAATTAGACGAGGACATCGTGATTCTAGTTCGAGTGGAGCTGTTGCCTTTGGTGGTGATTGTTCTGGCGAGTATTTTGCTGGCAGCCTGAAAGATGCTGCAAAGAGTATTGGAGTTTGTCCAACCACTCTGAAAAGGATATGTAGACAACAAGGAATAAAACGTTGGCCTTCACGAAAGATCAAGAAAGTTGGTCACTCTTTGGAAAAAATCCAGCTTGTTATTGATTCGGTCCAATGCACATCAGGTGATTTACAAATAAAATCCTTCTACTCAAACTTCCCAAACCTAGCATCTCCAAATTTATCAAGAACGGGTCCATTTTCAGCTTCAAAGCCAACCACTGATCCTAAGCCTTTAAACACACATCCCGAGGGTAGCACTTTCAGCCCCCCGGCTACTGCGTATCAATCACTCTCCTCGTCCTGCAGTCAAGGTTCCAGTTCAAGTCAATGCTGTTCCAGCGGAACACAGCCTCATCATGTGCATGCAACCAATGCTGCAGATCCTGAAGATCAAGCAGTCAGGGAAAGTCCTGATAATGGCATACTAAAGCGGGCCACAAGTGATGCAGGGTTACACGCATTAAATGACAGGCCAAAGCTCTTGCCAAGATCCCAGAGCCATATGTCCCTTACTGAGCGACCTAAGTGCGAGACTCGTCCGCCTGTTCCACAAAGAACAAAGGGGAATACTCGAGTTGAAGACGGTCTAAGATTTAAAGTGACTTTTGGGGAAGAGAGGGTCCGATTTCGGATCCGAAATAATTGGGGATATAGGGATTTACTGAGAGAAATTTCGAACCGGTTTAGTATGGAGGATACAAGCGGGTTCCACTTGAAGTACTTGGATGATGACTTGGAGTGGGTATTGTTAACTTGTGATGCGGACCTGGATGAGTGTGTTGATGTATGCCGATTGTCTAGGACCAACACGATTAAGCTCTCACTCCTACAAGATTCTCAGCAACATTTGGGAAGCTCTTTCGGTAGCAGCAGCCCCTTCAGATAG

Network for GWHGAAZE016669

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	573	613	9.80E-21
PF00564.25	PB1	788	866	1.80E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.757
	SRR3591706	second leaf	8.567
	SRR3591707	mature leaf	16.153
	SRR3591708	Shoot apex	7.708
	SRR3591709	Stem	8.573
	SRR3591710	White floral bud	13.726
	SRR3591711	White flower	15.658
	SRR3591712	Green floral bud	10.702
	SRR3591713	Yellow flower	19.054
SRP173429	SRR8316895	Juvenile bud stage	5.109
	SRR8316896	Juvenile bud stage	6.384
	SRR8316897	Juvenile bud stage	3.451
	SRR8316894	Third green stage	4.525
	SRR8316900	Third green stage	12.835
	SRR8316901	Third green stage	12.756
	SRR8316898	Complete white stage	5.169
	SRR8316899	Complete white stage	25.354
	SRR8316903	Complete white stage	10.226
	SRR8316902	Silver flowering stage	6.096
	SRR8316904	Silver flowering stage	9.003
	SRR8316905	Silver flowering stage	4.255
	SRR8316906	Gold flowering stage	16.610
	SRR8316907	Gold flowering stage	15.772
	SRR8316908	Gold flowering stage	18.763
SRP132670	SRR6706286	Control	13.001
	SRR6706287	Light intensity 50%	11.908
	SRR6706288	Light intensity 20%	13.382
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.692
	CNS0095593	Slightly white alabastrum(diploid) 2	6.143
	CNS0095594	Slightly white alabastrum(diploid) 3	4.474
	CNS0095595	Whole white alabastrum(diploid) 2	5.040
	CNS0095596	Whole white alabastrum(diploid) 3	3.478
	CNS0095597	Whole white alabastrum(diploid) 4	5.117
	CNS0095598	Silvery flower (diploied) 1	7.514
	CNS0095599	Silvery flower (diploied) 2	5.378
	CNS0095600	Silvery flower (diploied) 3	19.688
	CNS0095601	Golden flower (diploid) 1	7.108
	CNS0095602	Golden flower (diploid) 2	23.380
	CNS0095603	Golden flower (diploid) 3	21.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.048
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.400
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.824
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.279
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.122
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.553
	CNS0095610	Silvery flower (tetraploid) 1	17.804
	CNS0095611	Silvery flower (tetraploid) 2	18.955
	CNS0095612	Silvery flower (tetraploid) 3	11.233
	CNS0095613	Golden flower (tetraploid) 1	9.986
	CNS0095614	Golden flower (tetraploid) 2	18.653
	CNS0095615	Golden flower (tetraploid) 3	25.702
CRA001975	CRR073297	Stem 1	7.107
	CRR073298	Stem 2	9.357
	CRR073299	Stem 3	6.342
	CRR073300	Leaf 1	18.400
	CRR073301	Leaf 2	14.963
	CRR073302	Leaf 3	11.496
	CRR073303	Juvenile bud 1	13.382
	CRR073304	Juvenile bud 2	8.910
	CRR073305	Juvenile bud 3	21.934
	CRR073306	Third green 1	8.186
	CRR073307	Third green 2	6.057
	CRR073308	Third green 3	7.638
	CRR073309	Second white 1	12.175
	CRR073310	Second white 2	11.791
	CRR073311	Second white 3	14.183
	CRR073312	Silver flowering 1	11.362
	CRR073313	Silver flowering 2	9.505
	CRR073314	Silver flowering 3	7.725
	CRR073315	Gold flowering 1	5.467
	CRR073316	Gold flowering 2	9.988
	CRR073317	Gold flowering 3	6.021
	CRR073318	Tawny withering 1	5.064
	CRR073319	Tawny withering 2	4.211
	CRR073320	Tawny withering 3	4.460