Detail information of GWHGAAZE016670


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010663974.10PREDICTED: LOW QUALITY PROTEIN: Niemann-Pick C1 protein [Vitis vinifera]
trEMBLtr|A0A068UFF5|A0A068UFF5_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313|EMBL:CDP07285.1}
TAIR10AT4G38350.10Patched family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8064470680662486-
GWHAAZE00000004mRNA8064470680662486-
GWHAAZE00000004exon8064470680644786-
GWHAAZE00000004exon8064492080644988-
GWHAAZE00000004exon8064507780645143-
GWHAAZE00000004exon8064556380645630-
GWHAAZE00000004exon8064572980645839-
GWHAAZE00000004exon8064596880646025-
GWHAAZE00000004exon8064615080646186-
GWHAAZE00000004exon8064669680646789-
GWHAAZE00000004exon8064725180647316-
GWHAAZE00000004exon8064741780647481-
GWHAAZE00000004exon8064780580647949-
GWHAAZE00000004exon8064819080648255-
GWHAAZE00000004exon8064843180648580-
GWHAAZE00000004exon8064958880649657-
GWHAAZE00000004exon8065063180650707-
GWHAAZE00000004exon8065079180650859-
GWHAAZE00000004exon8065094780651030-
GWHAAZE00000004exon8065191480651954-
GWHAAZE00000004exon8065206580652202-
GWHAAZE00000004exon8065233980652537-
GWHAAZE00000004exon8065302780653155-
GWHAAZE00000004exon8065379980653882-
GWHAAZE00000004exon8065408480654197-
GWHAAZE00000004exon8065433380654440-
GWHAAZE00000004exon8065451880654613-
GWHAAZE00000004exon8065543280655500-
GWHAAZE00000004exon8065567880655779-
GWHAAZE00000004exon8065594780656042-
GWHAAZE00000004exon8065625580656338-
GWHAAZE00000004exon8065744380657560-
GWHAAZE00000004exon8065763880657714-
GWHAAZE00000004exon8065827080658458-
GWHAAZE00000004exon8065866180658908-
GWHAAZE00000004exon8065973780659887-
GWHAAZE00000004exon8066060280660718-
GWHAAZE00000004exon8066100580661112-
GWHAAZE00000004exon8066140280661501-
GWHAAZE00000004exon8066230280662486-
GWHAAZE00000004CDS8066230280662486-
GWHAAZE00000004CDS8066140280661501-
GWHAAZE00000004CDS8066100580661112-
GWHAAZE00000004CDS8066060280660718-
GWHAAZE00000004CDS8065973780659887-
GWHAAZE00000004CDS8065866180658908-
GWHAAZE00000004CDS8065827080658458-
GWHAAZE00000004CDS8065763880657714-
GWHAAZE00000004CDS8065744380657560-
GWHAAZE00000004CDS8065625580656338-
GWHAAZE00000004CDS8065594780656042-
GWHAAZE00000004CDS8065567880655779-
GWHAAZE00000004CDS8065543280655500-
GWHAAZE00000004CDS8065451880654613-
GWHAAZE00000004CDS8065433380654440-
GWHAAZE00000004CDS8065408480654197-
GWHAAZE00000004CDS8065379980653882-
GWHAAZE00000004CDS8065302780653155-
GWHAAZE00000004CDS8065233980652537-
GWHAAZE00000004CDS8065206580652202-
GWHAAZE00000004CDS8065191480651954-
GWHAAZE00000004CDS8065094780651030-
GWHAAZE00000004CDS8065079180650859-
GWHAAZE00000004CDS8065063180650707-
GWHAAZE00000004CDS8064958880649657-
GWHAAZE00000004CDS8064843180648580-
GWHAAZE00000004CDS8064819080648255-
GWHAAZE00000004CDS8064780580647949-
GWHAAZE00000004CDS8064741780647481-
GWHAAZE00000004CDS8064725180647316-
GWHAAZE00000004CDS8064669680646789-
GWHAAZE00000004CDS8064615080646186-
GWHAAZE00000004CDS8064596880646025-
GWHAAZE00000004CDS8064572980645839-
GWHAAZE00000004CDS8064556380645630-
GWHAAZE00000004CDS8064507780645143-
GWHAAZE00000004CDS8064492080644988-
GWHAAZE00000004CDS8064470680644786-
Transcript Sequence

Network for GWHGAAZE016670

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16414.6NPC1_N683007.60E-65
PF02460.19Patched5779184.30E-52
PF02460.19Patched107412897.30E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12385NPC1 Lysosome map04142
Cholesterol metabolismmap04979

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane
GO:0005319molecular_functionlipid transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.844
SRR3591706second leaf12.713
SRR3591707mature leaf3.710
SRR3591708Shoot apex20.842
SRR3591709Stem43.491
SRR3591710White floral bud16.467
SRR3591711White flower10.919
SRR3591712Green floral bud52.522
SRR3591713Yellow flower7.064
SRP173429 SRR8316895Juvenile bud stage 18.641
SRR8316896Juvenile bud stage 29.171
SRR8316897Juvenile bud stage 15.069
SRR8316894Third green stage 13.755
SRR8316900Third green stage 39.169
SRR8316901Third green stage 26.342
SRR8316898Complete white stage 2.538
SRR8316899Complete white stage 19.044
SRR8316903Complete white stage 5.982
SRR8316902Silver flowering stage2.331
SRR8316904Silver flowering stage4.143
SRR8316905Silver flowering stage1.341
SRR8316906Gold flowering stage 4.668
SRR8316907Gold flowering stage 3.557
SRR8316908Gold flowering stage 4.134
SRP132670SRR6706286Control35.071
SRR6706287Light intensity 50%36.730
SRR6706288Light intensity 20%44.687
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.573
CNS0095593Slightly white alabastrum(diploid) 211.289
CNS0095594Slightly white alabastrum(diploid) 315.649
CNS0095595Whole white alabastrum(diploid) 29.818
CNS0095596Whole white alabastrum(diploid) 37.149
CNS0095597Whole white alabastrum(diploid) 411.046
CNS0095598Silvery flower (diploied) 115.254
CNS0095599Silvery flower (diploied) 212.261
CNS0095600Silvery flower (diploied) 38.089
CNS0095601Golden flower (diploid) 18.848
CNS0095602Golden flower (diploid) 29.131
CNS0095603Golden flower (diploid) 39.376
CNS0095604Slightly white alabastrum(tetraploid) 113.180
CNS0095605Slightly white alabastrum(tetraploid) 211.686
CNS0095606Slightly white alabastrum(tetraploid) 331.259
CNS0095607Whole white alabastrum(tetraploid) 19.548
CNS0095608Whole white alabastrum(tetraploid) 26.627
CNS0095609Whole white alabastrum(tetraploid) 340.932
CNS0095610Silvery flower (tetraploid) 17.765
CNS0095611Silvery flower (tetraploid) 28.335
CNS0095612Silvery flower (tetraploid) 33.346
CNS0095613Golden flower (tetraploid) 11.480
CNS0095614Golden flower (tetraploid) 23.595
CNS0095615Golden flower (tetraploid) 31.792
CRA001975CRR073297Stem 120.413
CRR073298Stem 220.526
CRR073299Stem 313.084
CRR073300Leaf 126.115
CRR073301Leaf 226.155
CRR073302Leaf 317.481
CRR073303Juvenile bud 114.059
CRR073304Juvenile bud 26.305
CRR073305Juvenile bud 317.523
CRR073306Third green 10.688
CRR073307Third green 20.680
CRR073308Third green 31.255
CRR073309Second white 10.423
CRR073310Second white 20.150
CRR073311Second white 30.213
CRR073312Silver flowering 10.164
CRR073313Silver flowering 20.058
CRR073314Silver flowering 30.280
CRR073315Gold flowering 13.182
CRR073316Gold flowering 26.132
CRR073317Gold flowering 33.035
CRR073318Tawny withering 125.969
CRR073319Tawny withering 215.531
CRR073320Tawny withering 332.995