Gene detail

Detail information of GWHGAAZE016672

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDY31493.1	1.6058E-51	BnaC05g16020D [Brassica napus]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	3E-42	Serine/threonine-protein kinase PBS1
trEMBL	tr\|A0A078H3T7\|A0A078H3T7_BRANA	6E-52	BnaC05g16020D protein {ECO:0000313\|EMBL:CDY31493.1}
TAIR10	AT1G20650.1	4E-43	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80697376	80704808	-
GWHAAZE00000004	mRNA	80697376	80704808	-
GWHAAZE00000004	exon	80704748	80704808	-
GWHAAZE00000004	exon	80703518	80703649	-
GWHAAZE00000004	exon	80700942	80701144	-
GWHAAZE00000004	exon	80699573	80699762	-
GWHAAZE00000004	exon	80699436	80699488	-
GWHAAZE00000004	exon	80697376	80697666	-
GWHAAZE00000004	CDS	80704748	80704808	-
GWHAAZE00000004	CDS	80703518	80703649	-
GWHAAZE00000004	CDS	80700942	80701144	-
GWHAAZE00000004	CDS	80699573	80699762	-
GWHAAZE00000004	CDS	80699436	80699488	-
GWHAAZE00000004	CDS	80697376	80697666	-

Transcript Sequence
>GWHTAAZE016692 ATGAGTTGCTTTTCTTGTATTAATTCTCGCCCAAGGAAATATGATGATGAAGATCACTCAGCGGCGCAGCTCTACCGGTCCTCCACGGTTCCATTGCTCCGTTGCCCTCTACAGCTCTACTCCTCCCTCGGTCCTTCAATCCTCGTCTCCCTCACTCTCACAGCTAGGTCGCAGTCAATAAGCCCTTTGCTCCGAAGAGGAAAAGGAAAAGCAAGGAAATCCAAAGAAAGAAGTGGCATAAAGAGAAATGCAGCCCATAGCTACACATACCGTGAACTTGCTTCCGCAACCCAAAATTTTAGAGAAGCTAATATAATTGGAAAAGGTGGTTTTGGATGTGTTTACAAAGGCCGCTTGGACTCTGGGCAGGCGAGTTACCCTTCTCTCTTTTTTACGATTGTTGCTGTCAAACAACTTAATCCGAATGGCCTTCAGGGGAAACACGAATATCTCGTTGAGGTTCTCATGCTAAGTACACTGCACCACCCCCACCTTGTCACCTTAATGGGTTATTGCAATGATGGAGATCAAAGGCTGTTGGTTTATGAGTATATGCCCAAGGGTAGCTTGGAGAATCATCTCTTCGTTTTTTTTCTCAATCTTGAATGTGATATATTGTTGTCTTTGAGGAAACCTCGGTCTCGTCCTTTATTGAAGGACCGGAAGAGGTATCCTCAGTTGGTTGATCCCCTGCTTCAAGGGCCCTTGCCTACTCATTCTTTCAACAAAGCTGTTGCCATTATTAGAGCGTGTATTCAGGACGAGGCAAAATTCCGGCCCCTCATTGGTGATATTGTAGTGGCACTCGAGAACTTAGCCTCTGAAGCTGATCTCTCAGAGCCTTATATGTGTGCGCCCAGCACTCCCCACAATCCTCGCCTTCCCAACGAGACCGTGATCTTCCTTCTCGACAAAAATATAGGAGAGTAA

Network for GWHGAAZE016672

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	104	194	1.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.290
	SRR3591706	second leaf	0.145
	SRR3591707	mature leaf	0.055
	SRR3591708	Shoot apex	0.420
	SRR3591709	Stem	0.155
	SRR3591710	White floral bud	0.138
	SRR3591711	White flower	0.110
	SRR3591712	Green floral bud	1.802
	SRR3591713	Yellow flower	0.115
SRP173429	SRR8316895	Juvenile bud stage	4.021
	SRR8316896	Juvenile bud stage	7.226
	SRR8316897	Juvenile bud stage	4.404
	SRR8316894	Third green stage	0.342
	SRR8316900	Third green stage	0.515
	SRR8316901	Third green stage	0.563
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.562
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.760
	SRR6706287	Light intensity 50%	0.423
	SRR6706288	Light intensity 20%	0.555
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.157
	CNS0095593	Slightly white alabastrum(diploid) 2	3.356
	CNS0095594	Slightly white alabastrum(diploid) 3	8.621
	CNS0095595	Whole white alabastrum(diploid) 2	3.089
	CNS0095596	Whole white alabastrum(diploid) 3	2.616
	CNS0095597	Whole white alabastrum(diploid) 4	1.055
	CNS0095598	Silvery flower (diploied) 1	0.410
	CNS0095599	Silvery flower (diploied) 2	0.295
	CNS0095600	Silvery flower (diploied) 3	0.397
	CNS0095601	Golden flower (diploid) 1	0.148
	CNS0095602	Golden flower (diploid) 2	0.452
	CNS0095603	Golden flower (diploid) 3	0.161
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.189
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.364
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.159
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.121
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.262
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.245
	CNS0095610	Silvery flower (tetraploid) 1	0.229
	CNS0095611	Silvery flower (tetraploid) 2	0.104
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.067
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	5.586
	CRR073298	Stem 2	3.725
	CRR073299	Stem 3	4.337
	CRR073300	Leaf 1	0.594
	CRR073301	Leaf 2	1.326
	CRR073302	Leaf 3	1.099
	CRR073303	Juvenile bud 1	0.101
	CRR073304	Juvenile bud 2	0.048
	CRR073305	Juvenile bud 3	0.277
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.164
	CRR073308	Third green 3	0.146
	CRR073309	Second white 1	0.050
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000