Gene detail

Detail information of GWHGAAZE016675

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077244.1	0	PREDICTED: 12-oxophytodienoate reductase 1-like [Sesamum indicum]
Swissprot	tr\|Q8LAH7\|OPR1_ARATH	0	12-oxophytodienoate reductase 1
trEMBL	tr\|A0A061FLC8\|A0A061FLC8_THECC	0	12-oxophytodienoate reductase 2 isoform 1 {ECO:0000313\|EMBL:EOY15294.1}
TAIR10	AT1G76680.1	2E-159	12-oxophytodienoate reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80796709	80800322	-
GWHAAZE00000004	mRNA	80796709	80800322	-
GWHAAZE00000004	exon	80800135	80800322	-
GWHAAZE00000004	exon	80798005	80798145	-
GWHAAZE00000004	exon	80797697	80797827	-
GWHAAZE00000004	exon	80797410	80797586	-
GWHAAZE00000004	exon	80796709	80797310	-
GWHAAZE00000004	five_prime_UTR	80800218	80800322	-
GWHAAZE00000004	CDS	80800135	80800217	-
GWHAAZE00000004	CDS	80798005	80798145	-
GWHAAZE00000004	CDS	80797697	80797827	-
GWHAAZE00000004	CDS	80797410	80797586	-
GWHAAZE00000004	CDS	80796709	80797310	-

Transcript Sequence
>GWHTAAZE016695 CAAAAGTCTTGCTCTGAATTTAGATGATAACAGAGGAGGCATATATTGTATTCATAAATAATACATAATTAAGGCATATATTGTATTCATAATTAATACATAATTATGGAAGAAGAGAAGAAAGGTGAGAGGGAGGTTATTCCCCTCTTAATTCCCTACCAGCTGGGAAACTTTCATCTTTCTCACAGGATAGTTTTGGCCCCATTATCAAGACTGAGATCTTATAATTTCACAGCACAACCACATGCCATTCTTTATTACTCCCAAAGAACCACAAAGGGTGGCTTTTTGATTGGAGAAGCCTCTGGTATTTCGGACACTGCTCAAGGCTACCCAAATACGCCAGGCATTTGGACGAAAGGGCACATAGAAGCATGGAGGCCAATTGTTAATGCCGTTCATGAGAAAGGAGGCATATTCTTTTGCCAACTTTGGCACGCTGGGAGAGTTTCAAACTATAGTTATCAGCCTAATGGTCAGGCTCCAATCTCCTGTACTAGCAACCAAATTAAAGTTGATTTCGATATAGGAGGCTCCGGAGATGCAATATTTTCGCCTCCGCGACGGTTAACCATTGAAGAAATCACTCAGGTTGTCGATGACTTCAGAGTTGCAGCCAGAAATGCAATTGAAGCTGGTTTTGATGGGGTTGAGATTCACGGAGCAAATGGATACCTACTCGACCAATTCCTAAAGGACCAAGTGAATGATAGAACAGACGAATATGGTGGGAACCTGGAGAAGCGTTGTCGCTTCCCTCTAGAAGTGGTTGAAGCAGTTGCAAATGAGATTGGAGCTGATAAAGTCGGAATTAGACTCTCTCCTTTTGCCGATTACAATGACTGCGGAGATTCAAACCCAGACGCTCTTGGCCTTTACATGGCTGAGTCCTTGAACAAATACAAAATACTTTATTGCCATGTGATCGAGCCGAGGATGGTCACGCAGTTTGAGAAGCAGGAGACTAAAAACAGTCTATTGCCCATGAGAAAGGCTTTCAAAGGGACTTTCTTTGTTGCTGGTGGGTATAATAGGGATGATGGGAACAAAGTTATTAGCAGTGGGGGTGCTGATCTAGTTGCGTTTGGACGCTTGTTCTTGGCTAATCCGGATTTGCCTAGGAGATTTGAAATTGATGCTTGTCTCAATAAGTACGATAGAAGCACATTTTATACAGATGACCCTGTGGTTGGGTACACAGATTACCCATTTCTTGAATCCAGTACAGAAGGTCCTTGA

Network for GWHGAAZE016675

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00724.21	Oxidored_FMN	14	342	2.50E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.273
	SRR3591706	second leaf	2.470
	SRR3591707	mature leaf	23.613
	SRR3591708	Shoot apex	0.169
	SRR3591709	Stem	3.357
	SRR3591710	White floral bud	3.029
	SRR3591711	White flower	5.185
	SRR3591712	Green floral bud	1.204
	SRR3591713	Yellow flower	8.699
SRP173429	SRR8316895	Juvenile bud stage	0.066
	SRR8316896	Juvenile bud stage	0.459
	SRR8316897	Juvenile bud stage	0.256
	SRR8316894	Third green stage	0.037
	SRR8316900	Third green stage	0.542
	SRR8316901	Third green stage	0.058
	SRR8316898	Complete white stage	0.387
	SRR8316899	Complete white stage	0.535
	SRR8316903	Complete white stage	0.973
	SRR8316902	Silver flowering stage	1.140
	SRR8316904	Silver flowering stage	1.208
	SRR8316905	Silver flowering stage	0.786
	SRR8316906	Gold flowering stage	5.827
	SRR8316907	Gold flowering stage	2.271
	SRR8316908	Gold flowering stage	15.112
SRP132670	SRR6706286	Control	1.393
	SRR6706287	Light intensity 50%	0.559
	SRR6706288	Light intensity 20%	0.567
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.865
	CNS0095593	Slightly white alabastrum(diploid) 2	0.731
	CNS0095594	Slightly white alabastrum(diploid) 3	0.376
	CNS0095595	Whole white alabastrum(diploid) 2	0.560
	CNS0095596	Whole white alabastrum(diploid) 3	0.084
	CNS0095597	Whole white alabastrum(diploid) 4	0.577
	CNS0095598	Silvery flower (diploied) 1	4.981
	CNS0095599	Silvery flower (diploied) 2	2.987
	CNS0095600	Silvery flower (diploied) 3	1.667
	CNS0095601	Golden flower (diploid) 1	6.821
	CNS0095602	Golden flower (diploid) 2	5.393
	CNS0095603	Golden flower (diploid) 3	6.099
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.810
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.426
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.823
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.327
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.744
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.084
	CNS0095610	Silvery flower (tetraploid) 1	11.693
	CNS0095611	Silvery flower (tetraploid) 2	7.207
	CNS0095612	Silvery flower (tetraploid) 3	4.736
	CNS0095613	Golden flower (tetraploid) 1	11.706
	CNS0095614	Golden flower (tetraploid) 2	14.122
	CNS0095615	Golden flower (tetraploid) 3	5.970
CRA001975	CRR073297	Stem 1	0.099
	CRR073298	Stem 2	0.050
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.078
	CRR073301	Leaf 2	0.444
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.211
	CRR073304	Juvenile bud 2	0.473
	CRR073305	Juvenile bud 3	0.039
	CRR073306	Third green 1	0.103
	CRR073307	Third green 2	0.453
	CRR073308	Third green 3	0.347
	CRR073309	Second white 1	1.253
	CRR073310	Second white 2	1.255
	CRR073311	Second white 3	1.444
	CRR073312	Silver flowering 1	2.126
	CRR073313	Silver flowering 2	2.926
	CRR073314	Silver flowering 3	1.485
	CRR073315	Gold flowering 1	15.246
	CRR073316	Gold flowering 2	16.539
	CRR073317	Gold flowering 3	13.045
	CRR073318	Tawny withering 1	14.459
	CRR073319	Tawny withering 2	14.167
	CRR073320	Tawny withering 3	5.029