Detail information of GWHGAAZE016679


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI40732.31.4126E-159unnamed protein product [Vitis vinifera]
Swissprottr|P0C8R0|PP416_ARATH2E-137Putative pentatricopeptide repeat-containing protein At5g43820
trEMBLtr|D7UDB7|D7UDB7_VITVI5E-160Putative uncharacterized protein {ECO:0000313|EMBL:CBI40732.3}
TAIR10AT5G43820.11E-106Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8090030580901210+
GWHAAZE00000004mRNA8090030580901210+
GWHAAZE00000004exon8090030580901210+
GWHAAZE00000004CDS8090030580901210+
Transcript Sequence

Network for GWHGAAZE016679

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0270


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13812.7PPR_332903.00E-08
PF13041.7PPR_21211621.60E-07
PF01535.21PPR1862150.045
PF01535.21PPR2232510.042
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.427
SRR3591706second leaf2.263
SRR3591707mature leaf3.708
SRR3591708Shoot apex6.094
SRR3591709Stem5.984
SRR3591710White floral bud1.399
SRR3591711White flower2.186
SRR3591712Green floral bud3.585
SRR3591713Yellow flower0.380
SRP173429 SRR8316895Juvenile bud stage 4.293
SRR8316896Juvenile bud stage 5.091
SRR8316897Juvenile bud stage 3.925
SRR8316894Third green stage 2.362
SRR8316900Third green stage 4.508
SRR8316901Third green stage 3.014
SRR8316898Complete white stage 0.095
SRR8316899Complete white stage 3.648
SRR8316903Complete white stage 0.678
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.245
SRR8316905Silver flowering stage0.034
SRR8316906Gold flowering stage 0.483
SRR8316907Gold flowering stage 0.260
SRR8316908Gold flowering stage 0.937
SRP132670SRR6706286Control0.673
SRR6706287Light intensity 50%0.680
SRR6706288Light intensity 20%0.701
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.936
CNS0095593Slightly white alabastrum(diploid) 23.077
CNS0095594Slightly white alabastrum(diploid) 32.607
CNS0095595Whole white alabastrum(diploid) 24.159
CNS0095596Whole white alabastrum(diploid) 32.767
CNS0095597Whole white alabastrum(diploid) 42.066
CNS0095598Silvery flower (diploied) 12.916
CNS0095599Silvery flower (diploied) 24.647
CNS0095600Silvery flower (diploied) 31.669
CNS0095601Golden flower (diploid) 13.321
CNS0095602Golden flower (diploid) 22.576
CNS0095603Golden flower (diploid) 33.158
CNS0095604Slightly white alabastrum(tetraploid) 19.016
CNS0095605Slightly white alabastrum(tetraploid) 26.912
CNS0095606Slightly white alabastrum(tetraploid) 310.350
CNS0095607Whole white alabastrum(tetraploid) 15.159
CNS0095608Whole white alabastrum(tetraploid) 23.279
CNS0095609Whole white alabastrum(tetraploid) 37.188
CNS0095610Silvery flower (tetraploid) 11.452
CNS0095611Silvery flower (tetraploid) 21.407
CNS0095612Silvery flower (tetraploid) 31.245
CNS0095613Golden flower (tetraploid) 11.219
CNS0095614Golden flower (tetraploid) 21.358
CNS0095615Golden flower (tetraploid) 30.637
CRA001975CRR073297Stem 11.323
CRR073298Stem 21.567
CRR073299Stem 30.692
CRR073300Leaf 11.884
CRR073301Leaf 21.154
CRR073302Leaf 30.997
CRR073303Juvenile bud 10.149
CRR073304Juvenile bud 20.041
CRR073305Juvenile bud 30.498
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.024
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.461
CRR073316Gold flowering 20.425
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.561
CRR073319Tawny withering 21.779
CRR073320Tawny withering 32.241