Detail information of GWHGAAZE016683


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273511.20PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Vitis vinifera]
Swissprottr|P93006|P2C27_ARATH0Probable protein phosphatase 2C 27
trEMBLtr|F6I6U3|F6I6U3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62661.1}
TAIR10AT2G33700.14E-148Protein phosphatase 2C family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8097827880982239-
GWHAAZE00000004mRNA8097827880982239-
GWHAAZE00000004exon8098198880982239-
GWHAAZE00000004exon8098082380981017-
GWHAAZE00000004exon8097909480979299-
GWHAAZE00000004exon8097827880978836-
GWHAAZE00000004five_prime_UTR8098217780982239-
GWHAAZE00000004CDS8098198880982176-
GWHAAZE00000004CDS8098082380981017-
GWHAAZE00000004CDS8097909480979299-
GWHAAZE00000004CDS8097827880978836-
Transcript Sequence

Network for GWHGAAZE016683

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0268


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00481.22PP2C883393.60E-73
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyDBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity
GO:0043169molecular_functioncation binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.350
SRR3591706second leaf11.979
SRR3591707mature leaf23.716
SRR3591708Shoot apex16.884
SRR3591709Stem39.850
SRR3591710White floral bud35.419
SRR3591711White flower43.591
SRR3591712Green floral bud26.830
SRR3591713Yellow flower43.976
SRP173429 SRR8316895Juvenile bud stage 16.567
SRR8316896Juvenile bud stage 21.533
SRR8316897Juvenile bud stage 8.828
SRR8316894Third green stage 9.744
SRR8316900Third green stage 23.332
SRR8316901Third green stage 24.457
SRR8316898Complete white stage 22.573
SRR8316899Complete white stage 48.619
SRR8316903Complete white stage 38.881
SRR8316902Silver flowering stage18.792
SRR8316904Silver flowering stage32.018
SRR8316905Silver flowering stage12.095
SRR8316906Gold flowering stage 51.069
SRR8316907Gold flowering stage 47.242
SRR8316908Gold flowering stage 43.542
SRP132670SRR6706286Control28.368
SRR6706287Light intensity 50%32.542
SRR6706288Light intensity 20%29.210
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.035
CNS0095593Slightly white alabastrum(diploid) 218.814
CNS0095594Slightly white alabastrum(diploid) 316.616
CNS0095595Whole white alabastrum(diploid) 214.730
CNS0095596Whole white alabastrum(diploid) 316.615
CNS0095597Whole white alabastrum(diploid) 414.260
CNS0095598Silvery flower (diploied) 122.537
CNS0095599Silvery flower (diploied) 215.226
CNS0095600Silvery flower (diploied) 338.087
CNS0095601Golden flower (diploid) 122.163
CNS0095602Golden flower (diploid) 236.239
CNS0095603Golden flower (diploid) 333.473
CNS0095604Slightly white alabastrum(tetraploid) 117.636
CNS0095605Slightly white alabastrum(tetraploid) 215.351
CNS0095606Slightly white alabastrum(tetraploid) 327.716
CNS0095607Whole white alabastrum(tetraploid) 112.160
CNS0095608Whole white alabastrum(tetraploid) 213.014
CNS0095609Whole white alabastrum(tetraploid) 319.051
CNS0095610Silvery flower (tetraploid) 143.854
CNS0095611Silvery flower (tetraploid) 242.208
CNS0095612Silvery flower (tetraploid) 358.311
CNS0095613Golden flower (tetraploid) 139.996
CNS0095614Golden flower (tetraploid) 242.010
CNS0095615Golden flower (tetraploid) 377.582
CRA001975CRR073297Stem 140.673
CRR073298Stem 237.561
CRR073299Stem 335.216
CRR073300Leaf 144.643
CRR073301Leaf 241.400
CRR073302Leaf 328.996
CRR073303Juvenile bud 135.064
CRR073304Juvenile bud 229.354
CRR073305Juvenile bud 346.209
CRR073306Third green 142.026
CRR073307Third green 234.002
CRR073308Third green 338.084
CRR073309Second white 145.147
CRR073310Second white 247.309
CRR073311Second white 348.308
CRR073312Silver flowering 140.969
CRR073313Silver flowering 240.294
CRR073314Silver flowering 333.785
CRR073315Gold flowering 115.517
CRR073316Gold flowering 219.105
CRR073317Gold flowering 318.546
CRR073318Tawny withering 139.796
CRR073319Tawny withering 236.231
CRR073320Tawny withering 334.515