Detail information of GWHGAAZE016686


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001289237.10glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic [Pyrus x bretschneideri]
Swissprottr|P25857|G3PB_ARATH0Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic (Precursor)
trEMBLtr|W8SQT6|W8SQT6_9ROSA0Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}
TAIR10AT1G42970.10glyceraldehyde-3-phosphate dehydrogenase B subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8099841481002204-
GWHAAZE00000004mRNA8099841481002204-
GWHAAZE00000004exon8099841480998549-
GWHAAZE00000004exon8099877180999177-
GWHAAZE00000004exon8099926380999312-
GWHAAZE00000004exon8099940680999467-
GWHAAZE00000004exon8099956580999725-
GWHAAZE00000004exon8099983581000002-
GWHAAZE00000004exon8100011081000271-
GWHAAZE00000004exon8100188481001994-
GWHAAZE00000004exon8100210681002204-
GWHAAZE00000004CDS8100210681002204-
GWHAAZE00000004CDS8100188481001994-
GWHAAZE00000004CDS8100011081000271-
GWHAAZE00000004CDS8099983581000002-
GWHAAZE00000004CDS8099956580999725-
GWHAAZE00000004CDS8099940680999467-
GWHAAZE00000004CDS8099926380999312-
GWHAAZE00000004CDS8099877180999177-
GWHAAZE00000004CDS8099841480998549-
Transcript Sequence

Network for GWHGAAZE016686

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00044.25Gp_dh_N861878.60E-31
PF02800.21Gp_dh_C2434009.00E-65
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05298GAPA Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0006006biological_processglucose metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661molecular_functionNADP binding
GO:0051287molecular_functionNAD binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf178.820
SRR3591706second leaf2118.767
SRR3591707mature leaf2747.542
SRR3591708Shoot apex413.652
SRR3591709Stem151.001
SRR3591710White floral bud62.179
SRR3591711White flower65.316
SRR3591712Green floral bud55.537
SRR3591713Yellow flower46.167
SRP173429 SRR8316895Juvenile bud stage 168.664
SRR8316896Juvenile bud stage 151.512
SRR8316897Juvenile bud stage 129.321
SRR8316894Third green stage 65.560
SRR8316900Third green stage 145.094
SRR8316901Third green stage 136.344
SRR8316898Complete white stage 72.787
SRR8316899Complete white stage 131.490
SRR8316903Complete white stage 113.345
SRR8316902Silver flowering stage34.435
SRR8316904Silver flowering stage43.826
SRR8316905Silver flowering stage28.003
SRR8316906Gold flowering stage 56.780
SRR8316907Gold flowering stage 65.468
SRR8316908Gold flowering stage 54.886
SRP132670SRR6706286Control175.905
SRR6706287Light intensity 50%146.545
SRR6706288Light intensity 20%154.113
CNP0000432CNS0095592Slightly white alabastrum(diploid) 197.552
CNS0095593Slightly white alabastrum(diploid) 262.049
CNS0095594Slightly white alabastrum(diploid) 361.523
CNS0095595Whole white alabastrum(diploid) 262.751
CNS0095596Whole white alabastrum(diploid) 365.324
CNS0095597Whole white alabastrum(diploid) 448.818
CNS0095598Silvery flower (diploied) 1233.607
CNS0095599Silvery flower (diploied) 2217.425
CNS0095600Silvery flower (diploied) 3165.239
CNS0095601Golden flower (diploid) 1212.258
CNS0095602Golden flower (diploid) 2204.299
CNS0095603Golden flower (diploid) 3191.166
CNS0095604Slightly white alabastrum(tetraploid) 1105.102
CNS0095605Slightly white alabastrum(tetraploid) 2120.650
CNS0095606Slightly white alabastrum(tetraploid) 3151.567
CNS0095607Whole white alabastrum(tetraploid) 146.562
CNS0095608Whole white alabastrum(tetraploid) 254.871
CNS0095609Whole white alabastrum(tetraploid) 3108.215
CNS0095610Silvery flower (tetraploid) 1166.154
CNS0095611Silvery flower (tetraploid) 2227.969
CNS0095612Silvery flower (tetraploid) 395.156
CNS0095613Golden flower (tetraploid) 193.265
CNS0095614Golden flower (tetraploid) 2121.116
CNS0095615Golden flower (tetraploid) 340.763
CRA001975CRR073297Stem 1341.978
CRR073298Stem 2258.751
CRR073299Stem 3373.064
CRR073300Leaf 179.891
CRR073301Leaf 2101.739
CRR073302Leaf 395.219
CRR073303Juvenile bud 189.970
CRR073304Juvenile bud 272.720
CRR073305Juvenile bud 3119.324
CRR073306Third green 140.208
CRR073307Third green 239.079
CRR073308Third green 342.334
CRR073309Second white 1109.382
CRR073310Second white 268.984
CRR073311Second white 351.151
CRR073312Silver flowering 188.493
CRR073313Silver flowering 2102.531
CRR073314Silver flowering 397.078
CRR073315Gold flowering 13419.181
CRR073316Gold flowering 23969.240
CRR073317Gold flowering 33246.240
CRR073318Tawny withering 1134.230
CRR073319Tawny withering 2147.253
CRR073320Tawny withering 3132.943