Detail information of GWHGAAZE016699


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275451.10PREDICTED: SWI/SNF complex subunit SWI3B [Vitis vinifera]
Swissprottr|Q84JG2|SWI3B_ARATH1E-144SWI/SNF complex subunit SWI3B
trEMBLtr|D7UDF2|D7UDF2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI40767.3}
TAIR10AT2G33610.17E-112switch subunit 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8116764081170375-
GWHAAZE00000004mRNA8116764081170375-
GWHAAZE00000004exon8116764081167822-
GWHAAZE00000004exon8116793481168131-
GWHAAZE00000004exon8116855181168964-
GWHAAZE00000004exon8116947481169937-
GWHAAZE00000004exon8117006981170375-
GWHAAZE00000004CDS8117006981170375-
GWHAAZE00000004CDS8116947481169937-
GWHAAZE00000004CDS8116855181168964-
GWHAAZE00000004CDS8116793481168131-
GWHAAZE00000004CDS8116764081167822-
Transcript Sequence

Network for GWHGAAZE016699

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04433.18SWIRM991867.70E-25
PF00249.32Myb_DNA-binding2933352.70E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11649SMARCC Thermogenesis map04714

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.472
SRR3591706second leaf16.539
SRR3591707mature leaf29.302
SRR3591708Shoot apex37.448
SRR3591709Stem30.554
SRR3591710White floral bud24.946
SRR3591711White flower28.549
SRR3591712Green floral bud25.542
SRR3591713Yellow flower19.678
SRP173429 SRR8316895Juvenile bud stage 12.775
SRR8316896Juvenile bud stage 14.168
SRR8316897Juvenile bud stage 6.298
SRR8316894Third green stage 7.871
SRR8316900Third green stage 18.223
SRR8316901Third green stage 14.898
SRR8316898Complete white stage 5.916
SRR8316899Complete white stage 19.257
SRR8316903Complete white stage 11.517
SRR8316902Silver flowering stage6.710
SRR8316904Silver flowering stage9.155
SRR8316905Silver flowering stage4.703
SRR8316906Gold flowering stage 14.974
SRR8316907Gold flowering stage 16.016
SRR8316908Gold flowering stage 17.739
SRP132670SRR6706286Control20.053
SRR6706287Light intensity 50%19.711
SRR6706288Light intensity 20%18.993
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.802
CNS0095593Slightly white alabastrum(diploid) 212.724
CNS0095594Slightly white alabastrum(diploid) 39.969
CNS0095595Whole white alabastrum(diploid) 210.743
CNS0095596Whole white alabastrum(diploid) 38.668
CNS0095597Whole white alabastrum(diploid) 410.133
CNS0095598Silvery flower (diploied) 118.406
CNS0095599Silvery flower (diploied) 212.272
CNS0095600Silvery flower (diploied) 317.533
CNS0095601Golden flower (diploid) 112.056
CNS0095602Golden flower (diploid) 219.076
CNS0095603Golden flower (diploid) 316.484
CNS0095604Slightly white alabastrum(tetraploid) 112.978
CNS0095605Slightly white alabastrum(tetraploid) 210.443
CNS0095606Slightly white alabastrum(tetraploid) 321.163
CNS0095607Whole white alabastrum(tetraploid) 19.583
CNS0095608Whole white alabastrum(tetraploid) 25.782
CNS0095609Whole white alabastrum(tetraploid) 312.757
CNS0095610Silvery flower (tetraploid) 114.574
CNS0095611Silvery flower (tetraploid) 218.936
CNS0095612Silvery flower (tetraploid) 315.744
CNS0095613Golden flower (tetraploid) 18.537
CNS0095614Golden flower (tetraploid) 213.672
CNS0095615Golden flower (tetraploid) 311.819
CRA001975CRR073297Stem 123.826
CRR073298Stem 224.235
CRR073299Stem 328.393
CRR073300Leaf 126.946
CRR073301Leaf 224.107
CRR073302Leaf 322.426
CRR073303Juvenile bud 121.895
CRR073304Juvenile bud 215.487
CRR073305Juvenile bud 333.078
CRR073306Third green 110.481
CRR073307Third green 27.247
CRR073308Third green 38.806
CRR073309Second white 116.349
CRR073310Second white 212.411
CRR073311Second white 314.515
CRR073312Silver flowering 113.408
CRR073313Silver flowering 213.288
CRR073314Silver flowering 310.693
CRR073315Gold flowering 114.992
CRR073316Gold flowering 216.318
CRR073317Gold flowering 315.236
CRR073318Tawny withering 116.531
CRR073319Tawny withering 217.174
CRR073320Tawny withering 316.305