Detail information of GWHGAAZE016706


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAV54051.103-hydroxy-3-methylglutaryl coenzyme A reductase [Eucommia ulmoides]
Swissprottr|P29057|HMDH1_HEVBR03-hydroxy-3-methylglutaryl-coenzyme A reductase 1
trEMBLtr|Q5RZ62|Q5RZ62_EUCUL03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}
TAIR10AT1G76490.10hydroxy methylglutaryl CoA reductase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8126009281264036+
GWHAAZE00000004mRNA8126009281264036+
GWHAAZE00000004exon8126009281261053+
GWHAAZE00000004exon8126196581262146+
GWHAAZE00000004exon8126287481263187+
GWHAAZE00000004exon8126379181264036+
GWHAAZE00000004CDS8126009281261053+
GWHAAZE00000004CDS8126196581262146+
GWHAAZE00000004CDS8126287481263187+
GWHAAZE00000004CDS8126379181264036+
Transcript Sequence

Network for GWHGAAZE016706

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00368.19HMG-CoA_red1915561.80E-127
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00021HMGCR Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900
AMPK signaling pathwaymap04152
Bile secretionmap04976

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0015936biological_processcoenzyme A metabolic process
GO:0008299biological_processisoprenoid biosynthetic process
GO:0004420molecular_functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0050662molecular_functioncoenzyme binding
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf109.131
SRR3591706second leaf46.642
SRR3591707mature leaf18.004
SRR3591708Shoot apex64.363
SRR3591709Stem38.854
SRR3591710White floral bud105.218
SRR3591711White flower10.899
SRR3591712Green floral bud118.665
SRR3591713Yellow flower5.784
SRP173429 SRR8316895Juvenile bud stage 36.624
SRR8316896Juvenile bud stage 60.690
SRR8316897Juvenile bud stage 28.480
SRR8316894Third green stage 34.606
SRR8316900Third green stage 106.054
SRR8316901Third green stage 112.899
SRR8316898Complete white stage 11.781
SRR8316899Complete white stage 87.364
SRR8316903Complete white stage 22.965
SRR8316902Silver flowering stage4.141
SRR8316904Silver flowering stage7.290
SRR8316905Silver flowering stage3.425
SRR8316906Gold flowering stage 4.292
SRR8316907Gold flowering stage 4.403
SRR8316908Gold flowering stage 3.926
SRP132670SRR6706286Control125.277
SRR6706287Light intensity 50%140.045
SRR6706288Light intensity 20%139.471
CNP0000432CNS0095592Slightly white alabastrum(diploid) 156.055
CNS0095593Slightly white alabastrum(diploid) 274.818
CNS0095594Slightly white alabastrum(diploid) 353.078
CNS0095595Whole white alabastrum(diploid) 285.792
CNS0095596Whole white alabastrum(diploid) 394.958
CNS0095597Whole white alabastrum(diploid) 4114.517
CNS0095598Silvery flower (diploied) 122.617
CNS0095599Silvery flower (diploied) 237.790
CNS0095600Silvery flower (diploied) 313.772
CNS0095601Golden flower (diploid) 117.848
CNS0095602Golden flower (diploid) 214.032
CNS0095603Golden flower (diploid) 314.049
CNS0095604Slightly white alabastrum(tetraploid) 1109.468
CNS0095605Slightly white alabastrum(tetraploid) 295.749
CNS0095606Slightly white alabastrum(tetraploid) 3153.214
CNS0095607Whole white alabastrum(tetraploid) 1129.048
CNS0095608Whole white alabastrum(tetraploid) 2157.822
CNS0095609Whole white alabastrum(tetraploid) 3152.535
CNS0095610Silvery flower (tetraploid) 17.823
CNS0095611Silvery flower (tetraploid) 217.439
CNS0095612Silvery flower (tetraploid) 333.685
CNS0095613Golden flower (tetraploid) 14.524
CNS0095614Golden flower (tetraploid) 25.354
CNS0095615Golden flower (tetraploid) 314.089
CRA001975CRR073297Stem 1143.376
CRR073298Stem 2158.623
CRR073299Stem 3156.991
CRR073300Leaf 1273.209
CRR073301Leaf 2260.732
CRR073302Leaf 3218.398
CRR073303Juvenile bud 1239.472
CRR073304Juvenile bud 2216.164
CRR073305Juvenile bud 3298.041
CRR073306Third green 147.903
CRR073307Third green 262.788
CRR073308Third green 351.851
CRR073309Second white 15.056
CRR073310Second white 28.444
CRR073311Second white 39.149
CRR073312Silver flowering 129.654
CRR073313Silver flowering 238.917
CRR073314Silver flowering 321.941
CRR073315Gold flowering 134.441
CRR073316Gold flowering 223.141
CRR073317Gold flowering 327.123
CRR073318Tawny withering 1115.521
CRR073319Tawny withering 276.935
CRR073320Tawny withering 3111.891