Gene detail

Detail information of GWHGAAZE016708

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002269751.1	PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Vitis vinifera]
Swissprot	tr\|Q9SGE9\|SYFB_ARATH	Probable phenylalanine--tRNA ligase beta subunit
trEMBL	tr\|D7SIR4\|D7SIR4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15375.3}
TAIR10	AT1G72550.1	tRNA synthetase beta subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81283412	81297951	+
GWHAAZE00000004	mRNA	81283412	81297951	+
GWHAAZE00000004	exon	81283412	81283483	+
GWHAAZE00000004	exon	81283563	81283618	+
GWHAAZE00000004	exon	81283691	81283791	+
GWHAAZE00000004	exon	81284493	81284622	+
GWHAAZE00000004	exon	81284700	81284815	+
GWHAAZE00000004	exon	81285162	81285228	+
GWHAAZE00000004	exon	81285796	81285837	+
GWHAAZE00000004	exon	81286909	81286950	+
GWHAAZE00000004	exon	81287099	81287175	+
GWHAAZE00000004	exon	81287463	81287589	+
GWHAAZE00000004	exon	81287677	81287844	+
GWHAAZE00000004	exon	81289223	81289351	+
GWHAAZE00000004	exon	81289449	81289550	+
GWHAAZE00000004	exon	81290375	81290509	+
GWHAAZE00000004	exon	81290924	81290998	+
GWHAAZE00000004	exon	81291106	81291213	+
GWHAAZE00000004	exon	81291532	81291627	+
GWHAAZE00000004	exon	81291734	81291817	+
GWHAAZE00000004	exon	81297225	81297300	+
GWHAAZE00000004	exon	81297635	81297951	+
GWHAAZE00000004	five_prime_UTR	81283412	81283425	+
GWHAAZE00000004	CDS	81283426	81283483	+
GWHAAZE00000004	CDS	81283563	81283618	+
GWHAAZE00000004	CDS	81283691	81283791	+
GWHAAZE00000004	CDS	81284493	81284622	+
GWHAAZE00000004	CDS	81284700	81284815	+
GWHAAZE00000004	CDS	81285162	81285228	+
GWHAAZE00000004	CDS	81285796	81285837	+
GWHAAZE00000004	CDS	81286909	81286950	+
GWHAAZE00000004	CDS	81287099	81287175	+
GWHAAZE00000004	CDS	81287463	81287589	+
GWHAAZE00000004	CDS	81287677	81287844	+
GWHAAZE00000004	CDS	81289223	81289351	+
GWHAAZE00000004	CDS	81289449	81289550	+
GWHAAZE00000004	CDS	81290375	81290509	+
GWHAAZE00000004	CDS	81290924	81290998	+
GWHAAZE00000004	CDS	81291106	81291213	+
GWHAAZE00000004	CDS	81291532	81291627	+
GWHAAZE00000004	CDS	81291734	81291817	+
GWHAAZE00000004	CDS	81297225	81297300	+
GWHAAZE00000004	CDS	81297635	81297951	+

Transcript Sequence
>GWHTAAZE016728 AATTTAATCAATCGATGCCGACGGTAAGCGTGAAAAGGGATCCTTTCTTGAAAAAACTCAACAAAACTTACACCGACGAAGAATTCGACGCATTATGCTTTGCCTTCGGCATCGAGCTCGATGAAGTCACAACAGAAAAGGCTATTATAAGAAAGGAAAAACACTTGGATGAAGAAGCACCTGAAGATGATGAAGAAGTCATTTACAAAATCGAAGTTCCCGCTAATAGATATGATCTGCTTTGCTTTGAGGGTCTTGTTCAAGCCCTTCGTGTATTTCTTGGGATAGATCCCATACCTAAATATACAGTGGCTAGTATCAGCCGCGACTCCATGCTGAAAATGCATGTAAAACCAGAGACATCTAGTATACGCCCATATGTTGTGTGTGCGGTTTTAAGAGGAGTAACTTTTGATGAAGCAAGATATAACAGTTTCATTGATCTTCAGGATAGGCTTCACCAGAACATCTGCAGGCGAAGAACCTTGGTAGCTATTGGCACCCATGACCTAGACACTATAGAAGGCCCTTTCACATATGAGGCTTTGCCACCTTCAGACATAAACTTCGTTCCACTGAAGCAGGTTAAAAGCTTCAGAGCAGATGAGCTGATGGAGTTTTATAAATCAGACTTGAAGCTGAAGAAGTTTTTGCACATAATTGAGGATTCACCAGTGTTCCCTGTTTTATATGACCATAATAGAGTTGTTTTGTCTTTGCCTCCAGTTATTAATGGTGCTCATTCAGCCATTACTTTGAAGACAAAGAATGTGTTCATTGAATGCACAGCAACTGATTTGACAAAGGCCAAAATTGTTTTGAACACAATGGTAACCATGTTCTCAGTGTACTGTGAAAGGAAGTTTGATGTTGAACCAGTTGAAGTAACATACTCTGATGGGAAATCATATGTTTACCCTGATCTATCACCATACCATATGGAGGTGCCTCTGTCGTACATCAATAGTATAGTTGGAGTCTCGTTGGAGGCAAACAGTGTTACTGGCTTGTTGAATAAAATGCAATTAGATGCACAGCAGTCTGAATCAGGGGATAAACACTGCAACTTTACTGTATCCGTGCCTCCAACTAGAAGTGACATTCTTCATGCCTGTGATGTGGCAGAGGATGTTGCAATTGCTTATGGCTTCAACGAAATTCCGAAGCGAAAGCCTGCATCTTTGAAGCCATTGCCTCTGAATCAGCTTAGCGATCTTATCAGAATGGAGGTCGCAATGAATGGTTACACAGAAGTTTTGACATGGATATTATGCTCTTATAAAGAGAATTTCTCCATGCTTAACCGTAAAGATGACAAATCAACGGCTGTGATTATTGGAAATCCTCGCTCGGCTGATTTTGAGGTTGTCCGGACTAGTCTCATGCCTGGTATATTGAAGACTGTTGGACACAATAAAGACCATCCTAAGCCTATAAAGATATTTGAAGTGGGTGATATAACTCTATTGGATGAATCGAAAGATGTTGGTGCCAGAAATCTTCGTCAGCTTGCAGCTCTATATTGTGGTGCAACCTCCGGATTTGAGCTAATTCATGGCCTGATGGACAGAATTATGGAGGTAACTGGAACCCCATTTGTACAACCTGGGGATAATACAGGCTACTACATAAAATGTTCAGAAGAGCCTGAGTTTCTTCCTGGGAGACAAGCGACCATCATTTACAAAGGGAAGCAGATAGGCACTTTCGGAATTGTGCATCCAGAGATTGGTAAGCCTTCAAAAGGTTTCAACGTTGATGATCATAATGATGCCATAAACTCCACAATATGCCATATTGGCTCAACCGTGGTTACTGGAAGGTCATGGGACAAGTTGGTTCTGAAGAGTGAAATGCCAGTATTGGTTGAATTCCATGCTAGTTGGTGCGGTCCGTGCAGGATGACCCATCGAGTGATAGACGAGGTTGCGAAAGAGTATGCTGGGAGACTAAAATGCTATGTACTCCATGCAGACAATGACTTGGAAGTTGCTGAGAACTATGATATAAAAGCTGTGCCTGTAGTTCTGCTATTCAAGAACGGAGAGAAATGTGCTTCTGTGGCTGGTACCATGCCGAAGGAGTTCTATGTGGCTGCTATTGAAAGGGTCCTGTCTTAG

Network for GWHGAAZE016708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18262.2	PhetRS_B1	1	90	1.60E-30
PF03483.18	B3_4	120	281	4.00E-24
PF03484.16	B5	309	379	4.00E-17
PF17759.2	tRNA_synthFbeta	383	572	9.70E-43
PF00085.21	Thioredoxin	599	696	3.10E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01890	FARSB, pheT	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006432	biological_process	phenylalanyl-tRNA aminoacylation
GO:0045454	biological_process	cell redox homeostasis
GO:0005737	cellular_component	cytoplasm
GO:0000287	molecular_function	magnesium ion binding
GO:0003723	molecular_function	RNA binding
GO:0005524	molecular_function	ATP binding
GO:0000166	molecular_function	nucleotide binding
GO:0004826	molecular_function	phenylalanine-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.480
	SRR3591706	second leaf	32.601
	SRR3591707	mature leaf	30.762
	SRR3591708	Shoot apex	44.101
	SRR3591709	Stem	38.731
	SRR3591710	White floral bud	40.290
	SRR3591711	White flower	51.163
	SRR3591712	Green floral bud	47.743
	SRR3591713	Yellow flower	57.604
SRP173429	SRR8316895	Juvenile bud stage	20.276
	SRR8316896	Juvenile bud stage	27.940
	SRR8316897	Juvenile bud stage	16.675
	SRR8316894	Third green stage	13.383
	SRR8316900	Third green stage	36.980
	SRR8316901	Third green stage	32.784
	SRR8316898	Complete white stage	17.121
	SRR8316899	Complete white stage	46.054
	SRR8316903	Complete white stage	28.093
	SRR8316902	Silver flowering stage	21.175
	SRR8316904	Silver flowering stage	30.300
	SRR8316905	Silver flowering stage	13.272
	SRR8316906	Gold flowering stage	55.559
	SRR8316907	Gold flowering stage	47.390
	SRR8316908	Gold flowering stage	48.783
SRP132670	SRR6706286	Control	27.545
	SRR6706287	Light intensity 50%	29.798
	SRR6706288	Light intensity 20%	33.418
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.405
	CNS0095593	Slightly white alabastrum(diploid) 2	20.262
	CNS0095594	Slightly white alabastrum(diploid) 3	19.622
	CNS0095595	Whole white alabastrum(diploid) 2	19.188
	CNS0095596	Whole white alabastrum(diploid) 3	19.418
	CNS0095597	Whole white alabastrum(diploid) 4	19.648
	CNS0095598	Silvery flower (diploied) 1	24.571
	CNS0095599	Silvery flower (diploied) 2	27.471
	CNS0095600	Silvery flower (diploied) 3	43.383
	CNS0095601	Golden flower (diploid) 1	21.395
	CNS0095602	Golden flower (diploid) 2	42.575
	CNS0095603	Golden flower (diploid) 3	39.645
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.821
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.186
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.838
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.325
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.986
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.136
	CNS0095610	Silvery flower (tetraploid) 1	43.385
	CNS0095611	Silvery flower (tetraploid) 2	42.147
	CNS0095612	Silvery flower (tetraploid) 3	42.893
	CNS0095613	Golden flower (tetraploid) 1	26.508
	CNS0095614	Golden flower (tetraploid) 2	37.875
	CNS0095615	Golden flower (tetraploid) 3	43.196
CRA001975	CRR073297	Stem 1	21.915
	CRR073298	Stem 2	18.521
	CRR073299	Stem 3	18.776
	CRR073300	Leaf 1	21.325
	CRR073301	Leaf 2	19.332
	CRR073302	Leaf 3	20.791
	CRR073303	Juvenile bud 1	24.792
	CRR073304	Juvenile bud 2	19.925
	CRR073305	Juvenile bud 3	23.217
	CRR073306	Third green 1	10.200
	CRR073307	Third green 2	10.492
	CRR073308	Third green 3	10.666
	CRR073309	Second white 1	20.315
	CRR073310	Second white 2	17.761
	CRR073311	Second white 3	16.947
	CRR073312	Silver flowering 1	23.275
	CRR073313	Silver flowering 2	22.360
	CRR073314	Silver flowering 3	24.116
	CRR073315	Gold flowering 1	17.295
	CRR073316	Gold flowering 2	20.341
	CRR073317	Gold flowering 3	13.288
	CRR073318	Tawny withering 1	27.252
	CRR073319	Tawny withering 2	34.066
	CRR073320	Tawny withering 3	26.107