Gene detail

Detail information of GWHGAAZE016709

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100020.1	1.6856E-166	PREDICTED: AT-rich interactive domain-containing protein 5-like [Sesamum indicum]
Swissprot	tr\|Q0WNR6\|ARID5_ARATH	1E-118	AT-rich interactive domain-containing protein 5
trEMBL	tr\|K4BW09\|K4BW09_SOLLC	9E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g082820.2.1}
TAIR10	AT1G76510.2	3E-98	ARID/BRIGHT DNA-binding domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81312612	81320542	+
GWHAAZE00000004	mRNA	81312612	81320542	+
GWHAAZE00000004	exon	81312612	81313151	+
GWHAAZE00000004	exon	81313268	81313401	+
GWHAAZE00000004	exon	81313484	81313523	+
GWHAAZE00000004	exon	81316123	81316215	+
GWHAAZE00000004	exon	81317259	81317381	+
GWHAAZE00000004	exon	81317490	81317541	+
GWHAAZE00000004	exon	81317810	81317882	+
GWHAAZE00000004	exon	81318352	81318418	+
GWHAAZE00000004	exon	81318511	81318561	+
GWHAAZE00000004	exon	81320195	81320287	+
GWHAAZE00000004	exon	81320444	81320542	+
GWHAAZE00000004	CDS	81312612	81313151	+
GWHAAZE00000004	CDS	81313268	81313401	+
GWHAAZE00000004	CDS	81313484	81313523	+
GWHAAZE00000004	CDS	81316123	81316215	+
GWHAAZE00000004	CDS	81317259	81317381	+
GWHAAZE00000004	CDS	81317490	81317541	+
GWHAAZE00000004	CDS	81317810	81317882	+
GWHAAZE00000004	CDS	81318352	81318418	+
GWHAAZE00000004	CDS	81318511	81318561	+
GWHAAZE00000004	CDS	81320195	81320287	+
GWHAAZE00000004	CDS	81320444	81320542	+

Transcript Sequence
>GWHTAAZE016729 ATGGATGCAAACGAGGTGGATATGGAGGAAAGCAACGACTTAGTAGTCGATGCAGAAGGTAATGTCGGACAAGAGAAGCCACCTGCTACTTCGGAGACGTTAAACGATCAAAACCATAGCGCAACAGACTCGGAGGAGGATGATCAAAGCAGTTCAAAAATTACTGTGGACCACCAAAGCACAAGTCAAAATGGCAGGAAACACCAATCTCTTAACGGAAATGCGCAAGAGGAACAAAACCCTAGCAGAAATGCCTTGGAAGTGAAAAATCCTAGCCTCAGTGGGGAACAAAACACTCAACTGCATTCAAACGAGGCTCATCAGAGTGAGAGTGAGACTGAAGAATTGGCGGAGGAACCAAATGAGCTCAATGACCTAAGTGCTGATGCTGGCCTTAATGAAATGCTTGAAAATAAAAACGAAGGTGCTTATATAAATTCTCCAAATCAGCTAGAACCAGCCACACCCAACTCCCTTGTGCAATATTCGTCTGCAAAAGCTATAGAGCAATCATCTGTGAACGAGTTAAATGAAGCAAAGATGACTGAGCACGATGAAACTGGAACACCAGAAGAGCAAGCAGCATTCATGAAGGAGCTAGAAAGTTTCTATAGGGAAAGGGCCATGGAATTTAAACCTCCCAAGTTTTATGGACAGCCGCTAAATTGCCTGAAGCTATGGAGAGCTGTTATTAGTCTGGGTGGTTATGATCGGGCACTTCTGGAATACGAAAGGCACAAGTGTCAAAGTGGCGAGCTCCAGCTCCCTATTGCAGCCCTGCCCGAGCCTTCGAGTGTTGAAAATGAGGCCAATGGTTACCAAGCTCCAGGATCTGGTAGGGCACGAAGAGATGCTGCCGCTCGTGCTATGCAGGGTTGGCATGTCCAGCGTCTTTATGGTTATGGTGAGGTTGGTGAGCCAATTGTCAAGGACAAAAGCTTCAATAACATGCCCAAACGAGAAAAGAATCTCAAAAGCATTGGTTCACTTAAACACAAGAGACAGAACGAAGTGGAGCATTCAGTGAAAGCTGCCCGTACTGAATCATCTAAGCAACTGGCAACCATGGTTGTGGATGTTGGCCCTCCTGCTGATTGGGTGAAGATCAACGTGCAAGAAACTAAAGATTGTTTTGAGGTTTATGCTTTAGTCCCGGGGCTTTTGCGTGAGGAGGTGAGAGTGCAATCAGATCCAGCGGGGCGCCTTGTTATAACAGGTCAACCTGAGCACTCTGACAATCCATGGGGTATCACGCCTTTTCAAAAGGTGGTGAGCTTACCTGCAAGGATTGATCCACTTCAGACCTCTGCTGTAGTTAGCTTGCATGGTCGCCTCTTTGTTCGTGTGCCTTTTGAGCAGTCATGA

Network for GWHGAAZE016709

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.22	ARID	193	238	2.30E-07
PF00011.22	HSP20	371	452	1.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.837
	SRR3591706	second leaf	27.839
	SRR3591707	mature leaf	23.817
	SRR3591708	Shoot apex	54.076
	SRR3591709	Stem	25.816
	SRR3591710	White floral bud	18.611
	SRR3591711	White flower	16.768
	SRR3591712	Green floral bud	22.715
	SRR3591713	Yellow flower	10.699
SRP173429	SRR8316895	Juvenile bud stage	30.053
	SRR8316896	Juvenile bud stage	40.463
	SRR8316897	Juvenile bud stage	20.250
	SRR8316894	Third green stage	15.070
	SRR8316900	Third green stage	28.582
	SRR8316901	Third green stage	30.249
	SRR8316898	Complete white stage	6.774
	SRR8316899	Complete white stage	35.042
	SRR8316903	Complete white stage	11.515
	SRR8316902	Silver flowering stage	4.368
	SRR8316904	Silver flowering stage	5.753
	SRR8316905	Silver flowering stage	3.255
	SRR8316906	Gold flowering stage	7.798
	SRR8316907	Gold flowering stage	8.042
	SRR8316908	Gold flowering stage	10.110
SRP132670	SRR6706286	Control	35.002
	SRR6706287	Light intensity 50%	34.884
	SRR6706288	Light intensity 20%	33.515
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.860
	CNS0095593	Slightly white alabastrum(diploid) 2	28.902
	CNS0095594	Slightly white alabastrum(diploid) 3	26.677
	CNS0095595	Whole white alabastrum(diploid) 2	23.056
	CNS0095596	Whole white alabastrum(diploid) 3	16.533
	CNS0095597	Whole white alabastrum(diploid) 4	19.478
	CNS0095598	Silvery flower (diploied) 1	45.316
	CNS0095599	Silvery flower (diploied) 2	34.605
	CNS0095600	Silvery flower (diploied) 3	17.469
	CNS0095601	Golden flower (diploid) 1	45.951
	CNS0095602	Golden flower (diploid) 2	24.494
	CNS0095603	Golden flower (diploid) 3	24.528
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.508
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.596
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.141
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.937
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.707
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.495
	CNS0095610	Silvery flower (tetraploid) 1	17.022
	CNS0095611	Silvery flower (tetraploid) 2	22.961
	CNS0095612	Silvery flower (tetraploid) 3	12.683
	CNS0095613	Golden flower (tetraploid) 1	8.965
	CNS0095614	Golden flower (tetraploid) 2	15.136
	CNS0095615	Golden flower (tetraploid) 3	5.216
CRA001975	CRR073297	Stem 1	49.191
	CRR073298	Stem 2	44.018
	CRR073299	Stem 3	39.897
	CRR073300	Leaf 1	33.417
	CRR073301	Leaf 2	37.135
	CRR073302	Leaf 3	25.040
	CRR073303	Juvenile bud 1	20.768
	CRR073304	Juvenile bud 2	13.911
	CRR073305	Juvenile bud 3	23.428
	CRR073306	Third green 1	0.762
	CRR073307	Third green 2	2.641
	CRR073308	Third green 3	3.503
	CRR073309	Second white 1	0.622
	CRR073310	Second white 2	1.453
	CRR073311	Second white 3	1.112
	CRR073312	Silver flowering 1	0.712
	CRR073313	Silver flowering 2	0.505
	CRR073314	Silver flowering 3	0.472
	CRR073315	Gold flowering 1	20.148
	CRR073316	Gold flowering 2	24.800
	CRR073317	Gold flowering 3	12.150
	CRR073318	Tawny withering 1	20.332
	CRR073319	Tawny withering 2	22.430
	CRR073320	Tawny withering 3	23.225