Detail information of GWHGAAZE016715


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010910800.11.47529E-55PREDICTED: AP-1 complex subunit sigma-1 [Elaeis guineensis]
Swissprottr|Q8LEZ8|AP1S1_ARATH4E-53AP-1 complex subunit sigma-1
trEMBLtr|P93078|P93078_CAMAC9E-55Ap19 protein {ECO:0000313|EMBL:AAB39510.1}
TAIR10AT2G17380.12E-34associated protein 19

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8141027681415332+
GWHAAZE00000004mRNA8141027681415332+
GWHAAZE00000004exon8141027681410319+
GWHAAZE00000004exon8141231681412465+
GWHAAZE00000004exon8141287981412970+
GWHAAZE00000004exon8141311681413224+
GWHAAZE00000004exon8141331681413351+
GWHAAZE00000004exon8141444881414534+
GWHAAZE00000004exon8141463781415332+
GWHAAZE00000004five_prime_UTR8141027681410319+
GWHAAZE00000004five_prime_UTR8141231681412465+
GWHAAZE00000004five_prime_UTR8141287981412970+
GWHAAZE00000004five_prime_UTR8141311681413137+
GWHAAZE00000004CDS8141313881413224+
GWHAAZE00000004CDS8141331681413351+
GWHAAZE00000004CDS8141444881414534+
GWHAAZE00000004CDS8141463781414708+
GWHAAZE00000004three_prime_UTR8141470981415332+
Transcript Sequence

Network for GWHGAAZE016715

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01217.21Clat_adaptor_s1721.30E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12394AP1S1_2 Lysosome map04142

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf77.992
SRR3591706second leaf27.089
SRR3591707mature leaf17.184
SRR3591708Shoot apex39.186
SRR3591709Stem70.509
SRR3591710White floral bud63.290
SRR3591711White flower123.026
SRR3591712Green floral bud48.425
SRR3591713Yellow flower227.680
SRP173429 SRR8316895Juvenile bud stage 33.922
SRR8316896Juvenile bud stage 43.552
SRR8316897Juvenile bud stage 18.197
SRR8316894Third green stage 14.237
SRR8316900Third green stage 55.453
SRR8316901Third green stage 56.426
SRR8316898Complete white stage 42.145
SRR8316899Complete white stage 72.052
SRR8316903Complete white stage 48.823
SRR8316902Silver flowering stage72.864
SRR8316904Silver flowering stage84.579
SRR8316905Silver flowering stage41.182
SRR8316906Gold flowering stage 158.795
SRR8316907Gold flowering stage 154.862
SRR8316908Gold flowering stage 127.081
SRP132670SRR6706286Control25.983
SRR6706287Light intensity 50%26.695
SRR6706288Light intensity 20%27.598
CNP0000432CNS0095592Slightly white alabastrum(diploid) 159.452
CNS0095593Slightly white alabastrum(diploid) 261.855
CNS0095594Slightly white alabastrum(diploid) 353.824
CNS0095595Whole white alabastrum(diploid) 253.081
CNS0095596Whole white alabastrum(diploid) 346.248
CNS0095597Whole white alabastrum(diploid) 441.569
CNS0095598Silvery flower (diploied) 176.721
CNS0095599Silvery flower (diploied) 279.983
CNS0095600Silvery flower (diploied) 3119.177
CNS0095601Golden flower (diploid) 188.275
CNS0095602Golden flower (diploid) 2111.385
CNS0095603Golden flower (diploid) 3110.127
CNS0095604Slightly white alabastrum(tetraploid) 145.030
CNS0095605Slightly white alabastrum(tetraploid) 241.280
CNS0095606Slightly white alabastrum(tetraploid) 350.456
CNS0095607Whole white alabastrum(tetraploid) 133.803
CNS0095608Whole white alabastrum(tetraploid) 230.850
CNS0095609Whole white alabastrum(tetraploid) 345.325
CNS0095610Silvery flower (tetraploid) 199.832
CNS0095611Silvery flower (tetraploid) 281.777
CNS0095612Silvery flower (tetraploid) 386.463
CNS0095613Golden flower (tetraploid) 1107.145
CNS0095614Golden flower (tetraploid) 2102.771
CNS0095615Golden flower (tetraploid) 3152.845
CRA001975CRR073297Stem 130.333
CRR073298Stem 226.488
CRR073299Stem 329.167
CRR073300Leaf 130.038
CRR073301Leaf 228.219
CRR073302Leaf 336.479
CRR073303Juvenile bud 141.063
CRR073304Juvenile bud 233.716
CRR073305Juvenile bud 332.699
CRR073306Third green 187.639
CRR073307Third green 293.020
CRR073308Third green 371.336
CRR073309Second white 199.586
CRR073310Second white 2104.030
CRR073311Second white 377.629
CRR073312Silver flowering 1116.843
CRR073313Silver flowering 2114.321
CRR073314Silver flowering 392.015
CRR073315Gold flowering 122.037
CRR073316Gold flowering 225.245
CRR073317Gold flowering 316.978
CRR073318Tawny withering 142.771
CRR073319Tawny withering 248.632
CRR073320Tawny withering 354.212