Gene detail

Detail information of GWHGAAZE016726

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010652993.1	PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Vitis vinifera]
trEMBL	tr\|D7SWL0\|D7SWL0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21659.3}
TAIR10	AT5G08630.1	DDT domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81624044	81633419	+
GWHAAZE00000004	mRNA	81624044	81633419	+
GWHAAZE00000004	exon	81624044	81624094	+
GWHAAZE00000004	exon	81624554	81624690	+
GWHAAZE00000004	exon	81625445	81625617	+
GWHAAZE00000004	exon	81626489	81626910	+
GWHAAZE00000004	exon	81626988	81627069	+
GWHAAZE00000004	exon	81627389	81627738	+
GWHAAZE00000004	exon	81627830	81628248	+
GWHAAZE00000004	exon	81628340	81628505	+
GWHAAZE00000004	exon	81628890	81629051	+
GWHAAZE00000004	exon	81629245	81629333	+
GWHAAZE00000004	exon	81633269	81633419	+
GWHAAZE00000004	five_prime_UTR	81624044	81624094	+
GWHAAZE00000004	five_prime_UTR	81624554	81624577	+
GWHAAZE00000004	CDS	81624578	81624690	+
GWHAAZE00000004	CDS	81625445	81625617	+
GWHAAZE00000004	CDS	81626489	81626910	+
GWHAAZE00000004	CDS	81626988	81627069	+
GWHAAZE00000004	CDS	81627389	81627738	+
GWHAAZE00000004	CDS	81627830	81628248	+
GWHAAZE00000004	CDS	81628340	81628505	+
GWHAAZE00000004	CDS	81628890	81629051	+
GWHAAZE00000004	CDS	81629245	81629333	+
GWHAAZE00000004	CDS	81633269	81633419	+

Transcript Sequence
>GWHTAAZE016746 GAGAAAGTGGGGCGGGGAGAGGCCTTCTCCGCTAACAAGTCGAAAGGGAAGGCTGTTGAAGAAAGAAAGAAATAAATGCCTCTATACAGAAGAAAAGCGTTTCCTCTGTTGGAGAAGCCCAATGATTTGAAGCCTGAAGAGCTGGTCTTTCAAGTTCGTTTCACTAAAGAGATCTTTAGGGATTATGGGGAATACTTGAATAGGATTAATCTATATCGTCAAAGGGTTTGGACATGCAAAGTTACAGGGAAGAGTAACTTGACGTACGAAGAGGCGTTGGTGTCGGAGAAGAGGGCTACTGAAAAGGTTCAGCAGTTCCCTGAAGAACTAGTAGAGCATGTCCTTCGAGATGTCCAATTCAGTATGCTCACATTGAAAGATCTTGTCAACACAATTGCTGCAAAGTTGCAAGAACACGTGTTAGAGGGTAGTGAGTTATATGGGAGGAAGAATAATCGCATTTATCCATGCAAAGTGGTAAAAGTACTAAAGGATTCCGACAAAAAAACCCAATATCAAGTAGCTTGGCTCGACAAAGATAAGAAAATAACTAGTAATGCTGTAGTAGTTGGAGAGGATTTGATACGAAAAAAGTTGCCTTTTACTCGAGAGGTTCTTAAATCTTTTATCAGAGAATCTACATATCGAAGTGTTCCTTGGGTCCTACATGATAAATTGGCATTGATGCATGGAATTGCAACCGATCCTCCTGAAGAGTTAAAAGGCAAAGTTTTCTTACAGGATGGACTTCTTGTTAATAATAAGAAGAGGAAGAAAAGCGGGAAGGAGAATGATGAGGAATTTGGCAAATGTAAAAGAAAGAAACCAGGGGGGCAGGAAAGGTCCGAGACCAATGCTGAGGAAGATGATGATGGTAGACCAAAGGAAGAGGCCATTAAATATCCTATTGACGATCTGTTGGTGCATAGTGGTGCAGATGATCCTGTTTTCACTCAACGGCCTTCTCTATGTAGGGACTTCAATGTTCCAATGGATTGTGTTGGGGAACTTATAATGGTATGGGATTTTTGCTCTTCTTTCAGCAGGCTATTGAATTTGTGGCCCTTCTCCCTTGAAGATTTTGAAAATGCACTCTGCCATAAAGAAAGCAATGTGGTCCTCATCGTGGAGTGTCACTCTGCTCTTCTTCGATTGCTTATAAAAGACAGTGGGGATTATTTTACAACCATACAGAAGAAAAAGCGAAAGCCAAAGATCACATTAGTCACTTGGACAGAATTTTTGTGCGACTTCATAGAAATGATGAGCATTGCTGAATTGTCGAAATCCATGTCAACAATTAGGCGGGGTCATTATGGGCTTCTTGACATTCATGCGAAATTGAGAATCCTACAGGAGTTGGTTGCTAAAGTCCTTGAAACAGATGTGGTTAGGGGGAAGTTGGATGAGTATATTGAAGAGCGGCAGGAACTCGCAGCTACAAGAAGGGCGGTAGCAATTGAGGAAGGTAGAAAGAGGAGAGAAGATAAAGAACGTTCCAAGGTTGATGCTGATAGTAATGGCAAGGAAATGATGATAAATGGTACTGTTGACAGAATCTCAAGTGAACCAGAGAATCACACTCATAATAGACAGAATGGACATGTTGCAGGAAAACATAAACTTGAATACAGTGCGAGTAATCAAGTAAATGGCACATCAAAAACGAATGTGAAGAAGCAGAAGGTAGGTGCCAAGATTACTTCAGAAAGTAATGAAGATTCTTCTAGGAAAGGGGTGCATATATTGATGAACGAGGGTAAAAAGGAAATGCTGGAGAAAAAGAGTAAAGAACAAGGGAAAGAATATCTGGAAAGGGAAATGGAGAAAAGATTCATACGTACCAATCCATTGGGAAAAGACAGATATTATAATAGGTATTGGTTTTTCCGACGGGATGCCAGAATATTTGTCGAGAGTTCTGACTCTGCTCAATGGGGCTACTACAACACTAAGGAGGAGCTTGATGCTTTGATGGGCTCTCTGAACCGAAAGGGTGAAAGGGAGCGGGCTCTTCAAAAACAGCTGCAGAAATGCTACGATACAATATGCTCAAAACTGGAAAAGAGATCGAAGGAGGTAGCTCAAAGGACGGCAATGGAAGAAGCAGAGCTGAGGAGATCAAGTCGAGTCCGAGCTCCGCCAAGAGACAACCCTTCTCTGGCTTTCCGCAAGTACAACAACAAGTGGAAGGAAGACTAA

Network for GWHGAAZE016726

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10537.10	WAC_Acf1_DNA_bd	24	118	2.90E-30
PF02791.18	DDT	307	364	9.10E-17
PF15613.7	WSD	588	653	3.30E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	DDT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.208
	SRR3591706	second leaf	5.230
	SRR3591707	mature leaf	4.164
	SRR3591708	Shoot apex	11.247
	SRR3591709	Stem	5.246
	SRR3591710	White floral bud	8.747
	SRR3591711	White flower	9.270
	SRR3591712	Green floral bud	7.716
	SRR3591713	Yellow flower	8.055
SRP173429	SRR8316895	Juvenile bud stage	5.474
	SRR8316896	Juvenile bud stage	8.375
	SRR8316897	Juvenile bud stage	3.586
	SRR8316894	Third green stage	3.624
	SRR8316900	Third green stage	8.326
	SRR8316901	Third green stage	7.547
	SRR8316898	Complete white stage	2.386
	SRR8316899	Complete white stage	6.382
	SRR8316903	Complete white stage	4.656
	SRR8316902	Silver flowering stage	3.061
	SRR8316904	Silver flowering stage	4.829
	SRR8316905	Silver flowering stage	2.049
	SRR8316906	Gold flowering stage	5.856
	SRR8316907	Gold flowering stage	7.493
	SRR8316908	Gold flowering stage	6.809
SRP132670	SRR6706286	Control	5.323
	SRR6706287	Light intensity 50%	5.828
	SRR6706288	Light intensity 20%	5.684
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.492
	CNS0095593	Slightly white alabastrum(diploid) 2	4.304
	CNS0095594	Slightly white alabastrum(diploid) 3	6.401
	CNS0095595	Whole white alabastrum(diploid) 2	6.752
	CNS0095596	Whole white alabastrum(diploid) 3	7.354
	CNS0095597	Whole white alabastrum(diploid) 4	8.473
	CNS0095598	Silvery flower (diploied) 1	6.073
	CNS0095599	Silvery flower (diploied) 2	5.994
	CNS0095600	Silvery flower (diploied) 3	4.955
	CNS0095601	Golden flower (diploid) 1	5.385
	CNS0095602	Golden flower (diploid) 2	3.902
	CNS0095603	Golden flower (diploid) 3	4.293
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.137
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.413
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.619
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.294
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.840
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.834
	CNS0095610	Silvery flower (tetraploid) 1	5.952
	CNS0095611	Silvery flower (tetraploid) 2	5.377
	CNS0095612	Silvery flower (tetraploid) 3	6.055
	CNS0095613	Golden flower (tetraploid) 1	2.533
	CNS0095614	Golden flower (tetraploid) 2	5.126
	CNS0095615	Golden flower (tetraploid) 3	2.813
CRA001975	CRR073297	Stem 1	6.099
	CRR073298	Stem 2	8.325
	CRR073299	Stem 3	4.706
	CRR073300	Leaf 1	6.914
	CRR073301	Leaf 2	6.602
	CRR073302	Leaf 3	3.867
	CRR073303	Juvenile bud 1	3.884
	CRR073304	Juvenile bud 2	2.943
	CRR073305	Juvenile bud 3	2.590
	CRR073306	Third green 1	2.064
	CRR073307	Third green 2	1.837
	CRR073308	Third green 3	1.779
	CRR073309	Second white 1	0.691
	CRR073310	Second white 2	1.957
	CRR073311	Second white 3	1.734
	CRR073312	Silver flowering 1	1.137
	CRR073313	Silver flowering 2	0.680
	CRR073314	Silver flowering 3	2.402
	CRR073315	Gold flowering 1	0.660
	CRR073316	Gold flowering 2	2.491
	CRR073317	Gold flowering 3	0.952
	CRR073318	Tawny withering 1	3.169
	CRR073319	Tawny withering 2	4.441
	CRR073320	Tawny withering 3	4.055