Gene detail

Detail information of GWHGAAZE016738

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011007997.1	6.67798E-83	PREDICTED: myb-related protein 308-like [Populus euphratica]
Swissprot	tr\|Q9SZP1\|MYB4_ARATH	1E-75	Transcription repressor MYB4
trEMBL	tr\|W1NDS7\|W1NDS7_AMBTC	4E-83	Uncharacterized protein {ECO:0000313\|EMBL:ERM93882.1}
TAIR10	AT4G38620.1	4E-60	myb domain protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81771326	81773283	-
GWHAAZE00000004	mRNA	81771326	81773283	-
GWHAAZE00000004	exon	81771326	81771860	-
GWHAAZE00000004	exon	81772396	81772497	-
GWHAAZE00000004	exon	81773171	81773283	-
GWHAAZE00000004	CDS	81773171	81773283	-
GWHAAZE00000004	CDS	81772396	81772497	-
GWHAAZE00000004	CDS	81771326	81771860	-

Transcript Sequence
>GWHTAAZE016758 ATGGGAAGATCGCCTTGTTGTGAAAAGGATCACACAAACAAAGGAGCATGGACCAAGGAAGAAGACGAGCGCCTTATTAACTACATCAAATCTCATGGCGAAGGCTGCTGGAGACTTAGATGGATAAATTACCTGAGACCTGATCTCAAGCGTGGGAATTTTAGTGAAGAAGAAGACGAACTCATCATCAACCTTCACAGCTTACTTGGAAACAAATGGTCTCTTATCGCGGGAAGATTACCCGGAAGAACAGACAATGAGATCAAAAACTACTGGAACACTCACATCAAAAGAAAACTCCTCAGCCGTGGCATCGATCCACATACACATCGTCCAATCAACCCTGCATCAACGGTCACAATCTCACCGACTAAACCTCAAACATCGCAACTGGTACCACCACTGCCACTAACGATAGGCCACAATTTTGTGAATGACTTAAACATTGTTGATCAGGGCAAAACCCGAGGAGGCGGTTCATCAGATGAATCGAATAGCAACAACAGCAGCTTGACTGATCAAGAGGAACTAATGAACCCAAAACTCAACCTTGAACTCTCTATAAGCTTACCCACAGAATATCCAACAGTACTACAAATGACCACTTCTTCTGTAACTAAAACTAGTAGTAGTCAACATAAAGGAGTATGCTTGTGTTGCCAATTAGGGTTTAAAGATAGCCTTGGGTGTAAGTGCATACCCATCACAAGTACAACCACCATCTATGACATGCATAAATACTACGTATAG

Network for GWHGAAZE016738

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	38	1.80E-06
PF00249.32	Myb_DNA-binding	51	95	1.00E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.422
	SRR3591706	second leaf	6.241
	SRR3591707	mature leaf	7.526
	SRR3591708	Shoot apex	12.866
	SRR3591709	Stem	24.537
	SRR3591710	White floral bud	1.901
	SRR3591711	White flower	15.789
	SRR3591712	Green floral bud	3.235
	SRR3591713	Yellow flower	49.868
SRP173429	SRR8316895	Juvenile bud stage	3.378
	SRR8316896	Juvenile bud stage	5.894
	SRR8316897	Juvenile bud stage	3.507
	SRR8316894	Third green stage	2.585
	SRR8316900	Third green stage	4.223
	SRR8316901	Third green stage	5.600
	SRR8316898	Complete white stage	0.172
	SRR8316899	Complete white stage	2.949
	SRR8316903	Complete white stage	0.627
	SRR8316902	Silver flowering stage	4.928
	SRR8316904	Silver flowering stage	5.137
	SRR8316905	Silver flowering stage	2.474
	SRR8316906	Gold flowering stage	39.887
	SRR8316907	Gold flowering stage	35.003
	SRR8316908	Gold flowering stage	37.736
SRP132670	SRR6706286	Control	4.527
	SRR6706287	Light intensity 50%	3.194
	SRR6706288	Light intensity 20%	2.888
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.792
	CNS0095593	Slightly white alabastrum(diploid) 2	3.050
	CNS0095594	Slightly white alabastrum(diploid) 3	2.755
	CNS0095595	Whole white alabastrum(diploid) 2	2.698
	CNS0095596	Whole white alabastrum(diploid) 3	1.153
	CNS0095597	Whole white alabastrum(diploid) 4	2.176
	CNS0095598	Silvery flower (diploied) 1	4.964
	CNS0095599	Silvery flower (diploied) 2	5.410
	CNS0095600	Silvery flower (diploied) 3	7.950
	CNS0095601	Golden flower (diploid) 1	9.538
	CNS0095602	Golden flower (diploid) 2	24.746
	CNS0095603	Golden flower (diploid) 3	22.437
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.609
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.187
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.116
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.246
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.206
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.243
	CNS0095610	Silvery flower (tetraploid) 1	12.538
	CNS0095611	Silvery flower (tetraploid) 2	8.357
	CNS0095612	Silvery flower (tetraploid) 3	2.759
	CNS0095613	Golden flower (tetraploid) 1	27.088
	CNS0095614	Golden flower (tetraploid) 2	19.008
	CNS0095615	Golden flower (tetraploid) 3	24.253
CRA001975	CRR073297	Stem 1	7.621
	CRR073298	Stem 2	5.982
	CRR073299	Stem 3	3.214
	CRR073300	Leaf 1	5.992
	CRR073301	Leaf 2	11.388
	CRR073302	Leaf 3	6.380
	CRR073303	Juvenile bud 1	4.905
	CRR073304	Juvenile bud 2	3.167
	CRR073305	Juvenile bud 3	7.011
	CRR073306	Third green 1	17.406
	CRR073307	Third green 2	6.032
	CRR073308	Third green 3	11.028
	CRR073309	Second white 1	39.087
	CRR073310	Second white 2	65.805
	CRR073311	Second white 3	95.663
	CRR073312	Silver flowering 1	150.410
	CRR073313	Silver flowering 2	117.706
	CRR073314	Silver flowering 3	139.211
	CRR073315	Gold flowering 1	2.580
	CRR073316	Gold flowering 2	2.805
	CRR073317	Gold flowering 3	5.952
	CRR073318	Tawny withering 1	9.815
	CRR073319	Tawny withering 2	16.015
	CRR073320	Tawny withering 3	17.865