Gene detail

Detail information of GWHGAAZE016742

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006604048.1	1.52008E-19	PREDICTED: lysine-specific demethylase 3B-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	6E-16	Lysine-specific demethylase JMJ25
trEMBL	tr\|C6TBS4\|C6TBS4_SOYBN	1E-19	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU19276.1}
TAIR10	AT1G62310.1	1E-18	transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81842214	81846690	+
GWHAAZE00000004	mRNA	81842214	81846690	+
GWHAAZE00000004	exon	81842214	81842262	+
GWHAAZE00000004	exon	81842358	81842447	+
GWHAAZE00000004	exon	81846080	81846690	+
GWHAAZE00000004	CDS	81842214	81842262	+
GWHAAZE00000004	CDS	81842358	81842447	+
GWHAAZE00000004	CDS	81846080	81846690	+

Transcript Sequence
>GWHTAAZE016762 ATGGTTTACTTGACTATGGAGCATAAAAGGAAGCTTAAGATGGAATATGGAATTGAACCATGGACTTTTGTCCAAAAACTAGGAGATGCTGTTTTTATACCTGTGGGCTGTCCTTATCAAGTTAGAAATTTGAAGGCAAAGGTTCTTGGGAAAGACATTGCACTGCCTCCAGTTGTAAAGGTAGAGCCTTTCGACACAACTACTACACCTGCTCCTGCCGCTCCTACTGATACTGCTACTAGACCTGGCATGGGGGTTCCAGACGCATCTACTAGCAGACCACATATGGCTCTTTGGGAGGGTCATATGGTGCTAGAGTCATACGTAGATCTCTTGCTGCATATGAAGAGAGAGCACCCTGAGACTTTTCGGAACGATACTATTCGGAGTGCTTCCATGCAGACATACGCATTGAACTTACTCGGAGAGTCTTATGTTTTGTTTGCCAAAAAACCCATGGACACTATGGATGCTAAGGATATTGCTTACTTCAGGGACTTGTTTAGTGATCTGGAGCATTGCTTCAAGTTTAATGTGAATTGGCTACAAGAGCGAGTTGATCGCATAGAGGAGGTTAAGTTCAAGAATAATCATGTCGGTGGAGAGCTAGTACCCCTTAGGCTGTGTATAGAGGCTAGAGAGAGGGAGTTGGCTCATCTCAAAGCTCTCTATCAAGCAAAGACAGAGGAGGTCACGGATGCACACAAGCACGCAGCTGCTGGTCTTCTTATCGGATGGACGCCGCAATAG

Network for GWHGAAZE016742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02373.23	JmjC	5	45	7.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.983
	SRR3591706	second leaf	1.182
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	4.240
	SRR3591709	Stem	4.541
	SRR3591710	White floral bud	2.060
	SRR3591711	White flower	1.516
	SRR3591712	Green floral bud	2.579
	SRR3591713	Yellow flower	0.659
SRP173429	SRR8316895	Juvenile bud stage	4.858
	SRR8316896	Juvenile bud stage	7.077
	SRR8316897	Juvenile bud stage	0.949
	SRR8316894	Third green stage	2.829
	SRR8316900	Third green stage	5.245
	SRR8316901	Third green stage	5.261
	SRR8316898	Complete white stage	1.530
	SRR8316899	Complete white stage	5.712
	SRR8316903	Complete white stage	2.807
	SRR8316902	Silver flowering stage	1.051
	SRR8316904	Silver flowering stage	0.673
	SRR8316905	Silver flowering stage	0.536
	SRR8316906	Gold flowering stage	1.170
	SRR8316907	Gold flowering stage	2.100
	SRR8316908	Gold flowering stage	0.242
SRP132670	SRR6706286	Control	5.652
	SRR6706287	Light intensity 50%	5.590
	SRR6706288	Light intensity 20%	5.514
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.973
	CNS0095593	Slightly white alabastrum(diploid) 2	10.600
	CNS0095594	Slightly white alabastrum(diploid) 3	10.168
	CNS0095595	Whole white alabastrum(diploid) 2	8.968
	CNS0095596	Whole white alabastrum(diploid) 3	8.992
	CNS0095597	Whole white alabastrum(diploid) 4	10.652
	CNS0095598	Silvery flower (diploied) 1	2.921
	CNS0095599	Silvery flower (diploied) 2	3.879
	CNS0095600	Silvery flower (diploied) 3	3.251
	CNS0095601	Golden flower (diploid) 1	5.297
	CNS0095602	Golden flower (diploid) 2	3.672
	CNS0095603	Golden flower (diploid) 3	3.991
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.721
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.556
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.636
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.653
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.515
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.471
	CNS0095610	Silvery flower (tetraploid) 1	0.191
	CNS0095611	Silvery flower (tetraploid) 2	1.318
	CNS0095612	Silvery flower (tetraploid) 3	1.030
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.701
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	7.904
	CRR073298	Stem 2	7.839
	CRR073299	Stem 3	6.467
	CRR073300	Leaf 1	7.977
	CRR073301	Leaf 2	9.121
	CRR073302	Leaf 3	4.637
	CRR073303	Juvenile bud 1	5.203
	CRR073304	Juvenile bud 2	1.701
	CRR073305	Juvenile bud 3	5.771
	CRR073306	Third green 1	0.155
	CRR073307	Third green 2	1.081
	CRR073308	Third green 3	0.341
	CRR073309	Second white 1	0.428
	CRR073310	Second white 2	0.491
	CRR073311	Second white 3	0.364
	CRR073312	Silver flowering 1	0.293
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.193
	CRR073315	Gold flowering 1	2.809
	CRR073316	Gold flowering 2	2.817
	CRR073317	Gold flowering 3	0.587
	CRR073318	Tawny withering 1	4.607
	CRR073319	Tawny withering 2	8.889
	CRR073320	Tawny withering 3	8.400