Detail information of GWHGAAZE016742


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006604048.11.52008E-19PREDICTED: lysine-specific demethylase 3B-like isoform X1 [Glycine max]
Swissprottr|Q9SSE9|JMJ25_ARATH6E-16Lysine-specific demethylase JMJ25
trEMBLtr|C6TBS4|C6TBS4_SOYBN1E-19Putative uncharacterized protein {ECO:0000313|EMBL:ACU19276.1}
TAIR10AT1G62310.11E-18transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8184221481846690+
GWHAAZE00000004mRNA8184221481846690+
GWHAAZE00000004exon8184221481842262+
GWHAAZE00000004exon8184235881842447+
GWHAAZE00000004exon8184608081846690+
GWHAAZE00000004CDS8184221481842262+
GWHAAZE00000004CDS8184235881842447+
GWHAAZE00000004CDS8184608081846690+
Transcript Sequence

Network for GWHGAAZE016742

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02373.23JmjC5457.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyJumonji

KEGG pathway

KO Enzyme pathway mapID
K15601KDM3 Thermogenesis map04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.983
SRR3591706second leaf1.182
SRR3591707mature leaf0.000
SRR3591708Shoot apex4.240
SRR3591709Stem4.541
SRR3591710White floral bud2.060
SRR3591711White flower1.516
SRR3591712Green floral bud2.579
SRR3591713Yellow flower0.659
SRP173429 SRR8316895Juvenile bud stage 4.858
SRR8316896Juvenile bud stage 7.077
SRR8316897Juvenile bud stage 0.949
SRR8316894Third green stage 2.829
SRR8316900Third green stage 5.245
SRR8316901Third green stage 5.261
SRR8316898Complete white stage 1.530
SRR8316899Complete white stage 5.712
SRR8316903Complete white stage 2.807
SRR8316902Silver flowering stage1.051
SRR8316904Silver flowering stage0.673
SRR8316905Silver flowering stage0.536
SRR8316906Gold flowering stage 1.170
SRR8316907Gold flowering stage 2.100
SRR8316908Gold flowering stage 0.242
SRP132670SRR6706286Control5.652
SRR6706287Light intensity 50%5.590
SRR6706288Light intensity 20%5.514
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.973
CNS0095593Slightly white alabastrum(diploid) 210.600
CNS0095594Slightly white alabastrum(diploid) 310.168
CNS0095595Whole white alabastrum(diploid) 28.968
CNS0095596Whole white alabastrum(diploid) 38.992
CNS0095597Whole white alabastrum(diploid) 410.652
CNS0095598Silvery flower (diploied) 12.921
CNS0095599Silvery flower (diploied) 23.879
CNS0095600Silvery flower (diploied) 33.251
CNS0095601Golden flower (diploid) 15.297
CNS0095602Golden flower (diploid) 23.672
CNS0095603Golden flower (diploid) 33.991
CNS0095604Slightly white alabastrum(tetraploid) 13.721
CNS0095605Slightly white alabastrum(tetraploid) 22.556
CNS0095606Slightly white alabastrum(tetraploid) 34.636
CNS0095607Whole white alabastrum(tetraploid) 12.653
CNS0095608Whole white alabastrum(tetraploid) 21.515
CNS0095609Whole white alabastrum(tetraploid) 31.471
CNS0095610Silvery flower (tetraploid) 10.191
CNS0095611Silvery flower (tetraploid) 21.318
CNS0095612Silvery flower (tetraploid) 31.030
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.701
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 17.904
CRR073298Stem 27.839
CRR073299Stem 36.467
CRR073300Leaf 17.977
CRR073301Leaf 29.121
CRR073302Leaf 34.637
CRR073303Juvenile bud 15.203
CRR073304Juvenile bud 21.701
CRR073305Juvenile bud 35.771
CRR073306Third green 10.155
CRR073307Third green 21.081
CRR073308Third green 30.341
CRR073309Second white 10.428
CRR073310Second white 20.491
CRR073311Second white 30.364
CRR073312Silver flowering 10.293
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.193
CRR073315Gold flowering 12.809
CRR073316Gold flowering 22.817
CRR073317Gold flowering 30.587
CRR073318Tawny withering 14.607
CRR073319Tawny withering 28.889
CRR073320Tawny withering 38.400