Gene detail

Detail information of GWHGAAZE016746

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007022646.1	7.3187E-163	Transcription factor jumonji domain-containing protein, putative isoform 9 [Theobroma cacao]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	1E-95	Lysine-specific demethylase JMJ25
trEMBL	tr\|A0A061FB06\|A0A061FB06_THECC	3E-163	Transcription factor jumonji domain-containing protein, putative isoform 9 {ECO:0000313\|EMBL:EOY14171.1}
TAIR10	AT1G62310.1	9E-96	transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81914923	81923908	-
GWHAAZE00000004	mRNA	81914923	81923908	-
GWHAAZE00000004	exon	81923790	81923908	-
GWHAAZE00000004	exon	81922935	81923697	-
GWHAAZE00000004	exon	81914923	81915276	-
GWHAAZE00000004	CDS	81923790	81923908	-
GWHAAZE00000004	CDS	81922935	81923697	-
GWHAAZE00000004	CDS	81914923	81915276	-

Transcript Sequence
>GWHTAAZE016766 ATGTATATATATATCCAGCAATCAATGTTTCCTTATCTGGTGTTTGTTTGGGCAGGGTTATCATTATCAGAGCTAAAACTAGAAGACGTAGGTTGTTACTGGGACGAGCGTATTTATTGCAACAACTGCAGAACTTCCATTGCTGATTTTCTCAGGAGCTGTCCAACTTGTTCTTATGACCTTTGTCTTATTTGTTGCCGGGAGATTCGTGAAAATCACATGGAAGGAGGTAAAACTGAAGTCACAATGGAATATATCGACAAAGGGATAGCTTACATGCACGGTGACTATATGAGTTCTAATCAGCAATTAAGGAGCCAAACATTGGACATACCTGTTAAAAAAACTGGCTCCAAGAATCACTGTGAGTCGGTAAAAACTGTATGGAAAGCTCAGGAAAATGGTAGCATTCCATGCCCCCAAGTAAACATGGGTGGTTGCGGGAAAGGCATTTTAAAATTAAAGCGTACATTTCCAGAAGATTATGTCTCAAAGTTGTTACTGAAAGCGGAAGCAATAGCCAAAATATACAGACTCGAGCATAGGGCTGAAACTCCTGCACGTTGGTGCTCCTGTTTAAGCTTGGCGCATGAAATTCTTGGTGTTGGGAAAAATAAGTCAAAAAAATCCTCATCTCGGGAAGATTCTGATGACAACTATTTGTACTGTCCAATTGCTTCAGAAATTAAAAATGGGGATTTGAAACATTTCCAGTGTCATTGGTCCAAAGGTGAGCCAGTAATTGTCAATAATGTGCTTGAGACTACTTCTGGTTTGAGCTGGGAACCGATGGTTATGTGGCGTGCATTCCGTCAGATTACGCATCTTAACAAATCCAAACTTCTTGATGTTAATGTGATTAACTGTTTGGATTGGTGCGAGACGGATATTAATATACATGAGTTCTTCAGAGGGTATTTAGAAGGTCGATTTGACGAGTATGGGTGGCCTAACATTCTGATGTTAAAAGACTGGCCCTCGTCTAGCCTTTTTGAGGATCGGTTACCACGTCACTGTGCCGAGTTTATCATTTCTTTGCCCTTCAAGGAATATACGCATCCTACTAGTGGCTACCTAAATCTAGCAGTCAAATTACCTGAAAAATCATTGAAGCCAGACATGGGGCCAAAAACCTATATTGCTTATGGAGTTGCTCAAGAGCTAGGTCGTGGAGACTCTGTTATTAAGCTTCACTGTGATATTTCTGATTCGGTATGCTTTGTTTCTTGTTTATGA

Network for GWHGAAZE016746

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.049
	SRR3591706	second leaf	1.008
	SRR3591707	mature leaf	1.795
	SRR3591708	Shoot apex	2.508
	SRR3591709	Stem	1.139
	SRR3591710	White floral bud	3.396
	SRR3591711	White flower	6.973
	SRR3591712	Green floral bud	4.887
	SRR3591713	Yellow flower	4.457
SRP173429	SRR8316895	Juvenile bud stage	1.045
	SRR8316896	Juvenile bud stage	1.800
	SRR8316897	Juvenile bud stage	1.092
	SRR8316894	Third green stage	0.986
	SRR8316900	Third green stage	2.454
	SRR8316901	Third green stage	2.066
	SRR8316898	Complete white stage	0.726
	SRR8316899	Complete white stage	2.826
	SRR8316903	Complete white stage	1.213
	SRR8316902	Silver flowering stage	1.498
	SRR8316904	Silver flowering stage	1.229
	SRR8316905	Silver flowering stage	0.886
	SRR8316906	Gold flowering stage	2.082
	SRR8316907	Gold flowering stage	1.077
	SRR8316908	Gold flowering stage	2.004
SRP132670	SRR6706286	Control	2.287
	SRR6706287	Light intensity 50%	1.950
	SRR6706288	Light intensity 20%	1.841
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.977
	CNS0095593	Slightly white alabastrum(diploid) 2	1.069
	CNS0095594	Slightly white alabastrum(diploid) 3	0.330
	CNS0095595	Whole white alabastrum(diploid) 2	0.803
	CNS0095596	Whole white alabastrum(diploid) 3	0.483
	CNS0095597	Whole white alabastrum(diploid) 4	0.776
	CNS0095598	Silvery flower (diploied) 1	1.685
	CNS0095599	Silvery flower (diploied) 2	1.157
	CNS0095600	Silvery flower (diploied) 3	3.906
	CNS0095601	Golden flower (diploid) 1	0.469
	CNS0095602	Golden flower (diploid) 2	3.432
	CNS0095603	Golden flower (diploid) 3	3.472
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.111
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.767
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.575
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.216
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.393
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.257
	CNS0095610	Silvery flower (tetraploid) 1	3.836
	CNS0095611	Silvery flower (tetraploid) 2	6.530
	CNS0095612	Silvery flower (tetraploid) 3	3.848
	CNS0095613	Golden flower (tetraploid) 1	3.351
	CNS0095614	Golden flower (tetraploid) 2	3.201
	CNS0095615	Golden flower (tetraploid) 3	2.128
CRA001975	CRR073297	Stem 1	1.326
	CRR073298	Stem 2	1.845
	CRR073299	Stem 3	1.174
	CRR073300	Leaf 1	1.474
	CRR073301	Leaf 2	1.201
	CRR073302	Leaf 3	0.792
	CRR073303	Juvenile bud 1	0.611
	CRR073304	Juvenile bud 2	0.552
	CRR073305	Juvenile bud 3	1.345
	CRR073306	Third green 1	0.107
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.005
	CRR073310	Second white 2	0.516
	CRR073311	Second white 3	0.099
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.053
	CRR073314	Silver flowering 3	0.133
	CRR073315	Gold flowering 1	0.416
	CRR073316	Gold flowering 2	1.474
	CRR073317	Gold flowering 3	0.050
	CRR073318	Tawny withering 1	0.327
	CRR073319	Tawny withering 2	0.394
	CRR073320	Tawny withering 3	0.440