Detail information of GWHGAAZE016749


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284183.10PREDICTED: VHS domain-containing protein At3g16270 [Vitis vinifera]
Swissprottr|Q9C5H4|Y3627_ARATH3E-137VHS domain-containing protein At3g16270
trEMBLtr|D7U0F4|D7U0F4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI36100.3}
TAIR10AT3G16270.15E-110ENTH/VHS family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8199863482004344-
GWHAAZE00000004mRNA8199863482004344-
GWHAAZE00000004exon8200392282004344-
GWHAAZE00000004exon8200317782003389-
GWHAAZE00000004exon8199863481999566-
GWHAAZE00000004CDS8200392282004344-
GWHAAZE00000004CDS8200317782003389-
GWHAAZE00000004CDS8199863481999566-
Transcript Sequence

Network for GWHGAAZE016749

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0048
CFinderModule0293


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.203
SRR3591706second leaf23.177
SRR3591707mature leaf23.475
SRR3591708Shoot apex22.927
SRR3591709Stem36.264
SRR3591710White floral bud34.286
SRR3591711White flower50.699
SRR3591712Green floral bud44.124
SRR3591713Yellow flower38.829
SRP173429 SRR8316895Juvenile bud stage 20.987
SRR8316896Juvenile bud stage 27.789
SRR8316897Juvenile bud stage 14.124
SRR8316894Third green stage 12.482
SRR8316900Third green stage 36.956
SRR8316901Third green stage 33.544
SRR8316898Complete white stage 17.069
SRR8316899Complete white stage 55.785
SRR8316903Complete white stage 25.831
SRR8316902Silver flowering stage17.997
SRR8316904Silver flowering stage27.817
SRR8316905Silver flowering stage10.647
SRR8316906Gold flowering stage 42.841
SRR8316907Gold flowering stage 35.500
SRR8316908Gold flowering stage 42.604
SRP132670SRR6706286Control41.507
SRR6706287Light intensity 50%41.761
SRR6706288Light intensity 20%43.049
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.156
CNS0095593Slightly white alabastrum(diploid) 223.472
CNS0095594Slightly white alabastrum(diploid) 322.979
CNS0095595Whole white alabastrum(diploid) 221.933
CNS0095596Whole white alabastrum(diploid) 319.550
CNS0095597Whole white alabastrum(diploid) 421.817
CNS0095598Silvery flower (diploied) 123.026
CNS0095599Silvery flower (diploied) 221.247
CNS0095600Silvery flower (diploied) 346.061
CNS0095601Golden flower (diploid) 119.701
CNS0095602Golden flower (diploid) 244.429
CNS0095603Golden flower (diploid) 341.809
CNS0095604Slightly white alabastrum(tetraploid) 128.963
CNS0095605Slightly white alabastrum(tetraploid) 223.019
CNS0095606Slightly white alabastrum(tetraploid) 344.551
CNS0095607Whole white alabastrum(tetraploid) 122.797
CNS0095608Whole white alabastrum(tetraploid) 222.229
CNS0095609Whole white alabastrum(tetraploid) 338.082
CNS0095610Silvery flower (tetraploid) 143.383
CNS0095611Silvery flower (tetraploid) 245.370
CNS0095612Silvery flower (tetraploid) 340.866
CNS0095613Golden flower (tetraploid) 122.624
CNS0095614Golden flower (tetraploid) 237.619
CNS0095615Golden flower (tetraploid) 340.098
CRA001975CRR073297Stem 141.823
CRR073298Stem 239.182
CRR073299Stem 343.022
CRR073300Leaf 149.942
CRR073301Leaf 244.995
CRR073302Leaf 347.473
CRR073303Juvenile bud 166.109
CRR073304Juvenile bud 255.871
CRR073305Juvenile bud 371.870
CRR073306Third green 151.340
CRR073307Third green 241.330
CRR073308Third green 348.778
CRR073309Second white 165.977
CRR073310Second white 257.194
CRR073311Second white 357.983
CRR073312Silver flowering 155.698
CRR073313Silver flowering 258.020
CRR073314Silver flowering 343.223
CRR073315Gold flowering 123.613
CRR073316Gold flowering 227.799
CRR073317Gold flowering 327.685
CRR073318Tawny withering 127.233
CRR073319Tawny withering 232.799
CRR073320Tawny withering 335.585