Detail information of GWHGAAZE016759


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP21393.10unnamed protein product [Coffea canephora]
Swissprottr|Q9C810|Y1342_ARATH0PHD finger protein At1g33420
trEMBLtr|A0A068VNV1|A0A068VNV1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_3803 {ECO:0000313|EMBL:CDP21393.1}
TAIR10AT1G33420.18E-174RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8219628082201084+
GWHAAZE00000004mRNA8219628082201084+
GWHAAZE00000004exon8219628082196562+
GWHAAZE00000004exon8219751682197642+
GWHAAZE00000004exon8219811282198327+
GWHAAZE00000004exon8219904982199678+
GWHAAZE00000004exon8220027482201084+
GWHAAZE00000004CDS8219628082196562+
GWHAAZE00000004CDS8219751682197642+
GWHAAZE00000004CDS8219811282198327+
GWHAAZE00000004CDS8219904982199678+
GWHAAZE00000004CDS8220027482201084+
Transcript Sequence

Network for GWHGAAZE016759

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD6116575.90E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf63.678
SRR3591706second leaf20.539
SRR3591707mature leaf22.881
SRR3591708Shoot apex56.672
SRR3591709Stem66.413
SRR3591710White floral bud50.596
SRR3591711White flower60.794
SRR3591712Green floral bud44.111
SRR3591713Yellow flower47.265
SRP173429 SRR8316895Juvenile bud stage 29.408
SRR8316896Juvenile bud stage 30.999
SRR8316897Juvenile bud stage 16.796
SRR8316894Third green stage 10.957
SRR8316900Third green stage 26.373
SRR8316901Third green stage 27.938
SRR8316898Complete white stage 8.854
SRR8316899Complete white stage 47.014
SRR8316903Complete white stage 19.154
SRR8316902Silver flowering stage11.456
SRR8316904Silver flowering stage15.585
SRR8316905Silver flowering stage8.483
SRR8316906Gold flowering stage 26.820
SRR8316907Gold flowering stage 22.688
SRR8316908Gold flowering stage 28.520
SRP132670SRR6706286Control18.336
SRR6706287Light intensity 50%18.830
SRR6706288Light intensity 20%19.491
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.708
CNS0095593Slightly white alabastrum(diploid) 227.264
CNS0095594Slightly white alabastrum(diploid) 328.855
CNS0095595Whole white alabastrum(diploid) 221.236
CNS0095596Whole white alabastrum(diploid) 322.581
CNS0095597Whole white alabastrum(diploid) 421.201
CNS0095598Silvery flower (diploied) 136.099
CNS0095599Silvery flower (diploied) 220.803
CNS0095600Silvery flower (diploied) 330.558
CNS0095601Golden flower (diploid) 127.063
CNS0095602Golden flower (diploid) 242.401
CNS0095603Golden flower (diploid) 341.108
CNS0095604Slightly white alabastrum(tetraploid) 122.653
CNS0095605Slightly white alabastrum(tetraploid) 222.473
CNS0095606Slightly white alabastrum(tetraploid) 328.408
CNS0095607Whole white alabastrum(tetraploid) 123.228
CNS0095608Whole white alabastrum(tetraploid) 221.816
CNS0095609Whole white alabastrum(tetraploid) 321.368
CNS0095610Silvery flower (tetraploid) 124.933
CNS0095611Silvery flower (tetraploid) 228.384
CNS0095612Silvery flower (tetraploid) 317.754
CNS0095613Golden flower (tetraploid) 121.294
CNS0095614Golden flower (tetraploid) 227.600
CNS0095615Golden flower (tetraploid) 344.564
CRA001975CRR073297Stem 147.692
CRR073298Stem 246.699
CRR073299Stem 339.589
CRR073300Leaf 144.510
CRR073301Leaf 246.202
CRR073302Leaf 331.643
CRR073303Juvenile bud 135.427
CRR073304Juvenile bud 226.751
CRR073305Juvenile bud 346.608
CRR073306Third green 127.029
CRR073307Third green 224.351
CRR073308Third green 324.150
CRR073309Second white 129.229
CRR073310Second white 220.089
CRR073311Second white 326.661
CRR073312Silver flowering 126.814
CRR073313Silver flowering 226.915
CRR073314Silver flowering 320.675
CRR073315Gold flowering 129.968
CRR073316Gold flowering 239.880
CRR073317Gold flowering 324.625
CRR073318Tawny withering 146.065
CRR073319Tawny withering 248.869
CRR073320Tawny withering 350.324