Detail information of GWHGAAZE016767


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010243468.12.3001E-137PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
Swissprottr|P41129|RL132_BRANA2E-12960S ribosomal protein L13-2
trEMBLtr|A0A067JD82|A0A067JD82_JATCU3E-13760S ribosomal protein L13 {ECO:0000256|RuleBase:RU000572}
TAIR10AT3G49010.39E-86breast basic conserved 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8240130582402856-
GWHAAZE00000004mRNA8240130582402856-
GWHAAZE00000004exon8240130582401526-
GWHAAZE00000004exon8240167482401832-
GWHAAZE00000004exon8240246182402594-
GWHAAZE00000004exon8240275182402856-
GWHAAZE00000004CDS8240275182402856-
GWHAAZE00000004CDS8240246182402594-
GWHAAZE00000004CDS8240167482401832-
GWHAAZE00000004CDS8240130582401526-
Transcript Sequence

Network for GWHGAAZE016767

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01294.19Ribosomal_L13e61845.60E-79
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02873RP-L13e, RPL13 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf443.965
SRR3591706second leaf197.028
SRR3591707mature leaf111.242
SRR3591708Shoot apex534.843
SRR3591709Stem224.329
SRR3591710White floral bud197.011
SRR3591711White flower182.783
SRR3591712Green floral bud399.024
SRR3591713Yellow flower97.565
SRP173429 SRR8316895Juvenile bud stage 245.498
SRR8316896Juvenile bud stage 353.631
SRR8316897Juvenile bud stage 189.694
SRR8316894Third green stage 141.947
SRR8316900Third green stage 508.011
SRR8316901Third green stage 465.527
SRR8316898Complete white stage 63.545
SRR8316899Complete white stage 413.781
SRR8316903Complete white stage 105.210
SRR8316902Silver flowering stage45.571
SRR8316904Silver flowering stage45.777
SRR8316905Silver flowering stage24.693
SRR8316906Gold flowering stage 74.472
SRR8316907Gold flowering stage 72.804
SRR8316908Gold flowering stage 117.355
SRP132670SRR6706286Control475.088
SRR6706287Light intensity 50%467.346
SRR6706288Light intensity 20%507.825
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1442.704
CNS0095593Slightly white alabastrum(diploid) 2515.893
CNS0095594Slightly white alabastrum(diploid) 3401.155
CNS0095595Whole white alabastrum(diploid) 2446.711
CNS0095596Whole white alabastrum(diploid) 3486.285
CNS0095597Whole white alabastrum(diploid) 4340.577
CNS0095598Silvery flower (diploied) 1280.851
CNS0095599Silvery flower (diploied) 2221.521
CNS0095600Silvery flower (diploied) 3135.344
CNS0095601Golden flower (diploid) 1234.147
CNS0095602Golden flower (diploid) 2155.935
CNS0095603Golden flower (diploid) 3152.252
CNS0095604Slightly white alabastrum(tetraploid) 1525.060
CNS0095605Slightly white alabastrum(tetraploid) 2509.636
CNS0095606Slightly white alabastrum(tetraploid) 3684.055
CNS0095607Whole white alabastrum(tetraploid) 1354.519
CNS0095608Whole white alabastrum(tetraploid) 2296.357
CNS0095609Whole white alabastrum(tetraploid) 3530.248
CNS0095610Silvery flower (tetraploid) 1138.586
CNS0095611Silvery flower (tetraploid) 2136.983
CNS0095612Silvery flower (tetraploid) 398.720
CNS0095613Golden flower (tetraploid) 163.687
CNS0095614Golden flower (tetraploid) 2100.441
CNS0095615Golden flower (tetraploid) 350.495
CRA001975CRR073297Stem 1376.463
CRR073298Stem 2401.193
CRR073299Stem 3425.931
CRR073300Leaf 1458.358
CRR073301Leaf 2481.592
CRR073302Leaf 3556.822
CRR073303Juvenile bud 1486.467
CRR073304Juvenile bud 2329.778
CRR073305Juvenile bud 3383.256
CRR073306Third green 141.896
CRR073307Third green 246.276
CRR073308Third green 358.743
CRR073309Second white 141.456
CRR073310Second white 228.136
CRR073311Second white 316.938
CRR073312Silver flowering 132.009
CRR073313Silver flowering 244.507
CRR073314Silver flowering 326.203
CRR073315Gold flowering 1140.885
CRR073316Gold flowering 2157.552
CRR073317Gold flowering 3144.992
CRR073318Tawny withering 1370.932
CRR073319Tawny withering 2294.464
CRR073320Tawny withering 3338.104