Detail information of GWHGAAZE016801


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002523404.10rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
Swissprottr|P08927|RUBB_PEA0RuBisCO large subunit-binding protein subunit beta, chloroplastic (Precursor)
trEMBLtr|B9SBN5|B9SBN5_RICCO0Rubisco subunit binding-protein beta subunit, rubb, putative {ECO:0000313|EMBL:EEF38983.1}
TAIR10AT3G13470.10TCP-1/cpn60 chaperonin family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8311921883132504-
GWHAAZE00000004mRNA8311921883132504-
GWHAAZE00000004exon8311921883119361-
GWHAAZE00000004exon8311954883119640-
GWHAAZE00000004exon8311988283119974-
GWHAAZE00000004exon8312065383120757-
GWHAAZE00000004exon8312084983120920-
GWHAAZE00000004exon8312103183121108-
GWHAAZE00000004exon8312119483121363-
GWHAAZE00000004exon8312186083122094-
GWHAAZE00000004exon8312220583122447-
GWHAAZE00000004exon8312295783123052-
GWHAAZE00000004exon8312317683123313-
GWHAAZE00000004exon8312474683124871-
GWHAAZE00000004exon8313160283131852-
GWHAAZE00000004exon8313231783132504-
GWHAAZE00000004five_prime_UTR8313231783132504-
GWHAAZE00000004five_prime_UTR8313183983131852-
GWHAAZE00000004CDS8313160283131838-
GWHAAZE00000004CDS8312474683124871-
GWHAAZE00000004CDS8312317683123313-
GWHAAZE00000004CDS8312295783123052-
GWHAAZE00000004CDS8312220583122447-
GWHAAZE00000004CDS8312186083122094-
GWHAAZE00000004CDS8312119483121363-
GWHAAZE00000004CDS8312103183121108-
GWHAAZE00000004CDS8312084983120920-
GWHAAZE00000004CDS8312065383120757-
GWHAAZE00000004CDS8311988283119974-
GWHAAZE00000004CDS8311954883119640-
GWHAAZE00000004CDS8311921883119361-
Transcript Sequence

Network for GWHGAAZE016801

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00118.25Cpn60_TCP1855884.70E-103
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04077groEL, HSPD1 RNA degradation map03018
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0042026biological_processprotein refolding
GO:0006457biological_processprotein folding
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf94.132
SRR3591706second leaf72.789
SRR3591707mature leaf62.426
SRR3591708Shoot apex134.827
SRR3591709Stem62.781
SRR3591710White floral bud76.289
SRR3591711White flower114.790
SRR3591712Green floral bud100.615
SRR3591713Yellow flower172.029
SRP173429 SRR8316895Juvenile bud stage 84.846
SRR8316896Juvenile bud stage 107.064
SRR8316897Juvenile bud stage 78.607
SRR8316894Third green stage 50.100
SRR8316900Third green stage 182.857
SRR8316901Third green stage 133.458
SRR8316898Complete white stage 35.720
SRR8316899Complete white stage 119.838
SRR8316903Complete white stage 60.255
SRR8316902Silver flowering stage54.414
SRR8316904Silver flowering stage65.915
SRR8316905Silver flowering stage39.025
SRR8316906Gold flowering stage 157.539
SRR8316907Gold flowering stage 153.992
SRR8316908Gold flowering stage 158.939
SRP132670SRR6706286Control152.387
SRR6706287Light intensity 50%159.542
SRR6706288Light intensity 20%175.359
CNP0000432CNS0095592Slightly white alabastrum(diploid) 191.664
CNS0095593Slightly white alabastrum(diploid) 280.478
CNS0095594Slightly white alabastrum(diploid) 370.847
CNS0095595Whole white alabastrum(diploid) 286.209
CNS0095596Whole white alabastrum(diploid) 378.888
CNS0095597Whole white alabastrum(diploid) 465.521
CNS0095598Silvery flower (diploied) 1126.386
CNS0095599Silvery flower (diploied) 2142.675
CNS0095600Silvery flower (diploied) 3164.837
CNS0095601Golden flower (diploid) 1172.555
CNS0095602Golden flower (diploid) 2198.751
CNS0095603Golden flower (diploid) 3196.928
CNS0095604Slightly white alabastrum(tetraploid) 1117.512
CNS0095605Slightly white alabastrum(tetraploid) 2106.932
CNS0095606Slightly white alabastrum(tetraploid) 3225.279
CNS0095607Whole white alabastrum(tetraploid) 144.453
CNS0095608Whole white alabastrum(tetraploid) 246.302
CNS0095609Whole white alabastrum(tetraploid) 3197.757
CNS0095610Silvery flower (tetraploid) 1226.797
CNS0095611Silvery flower (tetraploid) 2308.250
CNS0095612Silvery flower (tetraploid) 3311.936
CNS0095613Golden flower (tetraploid) 1190.973
CNS0095614Golden flower (tetraploid) 2249.543
CNS0095615Golden flower (tetraploid) 3158.190
CRA001975CRR073297Stem 1123.744
CRR073298Stem 2119.086
CRR073299Stem 3110.019
CRR073300Leaf 1122.864
CRR073301Leaf 2112.582
CRR073302Leaf 3109.016
CRR073303Juvenile bud 1124.487
CRR073304Juvenile bud 297.248
CRR073305Juvenile bud 3130.818
CRR073306Third green 171.865
CRR073307Third green 231.073
CRR073308Third green 350.363
CRR073309Second white 195.653
CRR073310Second white 2122.368
CRR073311Second white 3140.941
CRR073312Silver flowering 1117.984
CRR073313Silver flowering 2111.959
CRR073314Silver flowering 394.381
CRR073315Gold flowering 179.506
CRR073316Gold flowering 2128.403
CRR073317Gold flowering 354.930
CRR073318Tawny withering 141.945
CRR073319Tawny withering 231.884
CRR073320Tawny withering 350.705