Gene detail

Detail information of GWHGAAZE016821

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002306254.2	ABC transporter family protein [Populus trichocarpa]
Swissprot	tr\|Q9SIT6\|AB5G_ARATH	ABC transporter G family member 5
trEMBL	tr\|B9H498\|B9H498_POPTR	ABC transporter family protein {ECO:0000313\|EMBL:EEE93250.2}
TAIR10	AT2G13610.1	ABC-2 type transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	83524841	83526742	-
GWHAAZE00000004	mRNA	83524841	83526742	-
GWHAAZE00000004	exon	83525803	83526742	-
GWHAAZE00000004	exon	83524841	83525757	-
GWHAAZE00000004	CDS	83525803	83526742	-
GWHAAZE00000004	CDS	83524841	83525757	-

Transcript Sequence
>GWHTAAZE016841 ATGAAGAAAGAAGGCTGTGACATAGAAGCGATAGGCATAAACTACACAATCTACACACAAAAGCCACAAGGCCCTTCAAAAATCTCTAGCAAAGTCCCCCAACAGGTACTCCAAACCGATGATCACGCGAAAGCGAACCGAAGAATCCGACATGTACTCAAGGACGTGAACTGCCGAGCCAAACCCTGGGAAATCCTCGCGATAGTAGGTCCTAGTGGTGCCGGAAAATCCTCCCTCCTTGAGATCCTCGCCGGAAAACTCACCCCTCAAACCTCATCTATCTTCATCAACCAGAAACCAGTCAACAAAGCCCGGTTCAAGAAGCTCTCCGGGTACGTGACCCAGAAGGATACCCTATTCCCCCTCCTCACCGTTGAGGAAACTCTAAGGTTCAGTGCCAAGCTCCGGCTCAGTCTGCCTGAGCTGGAGCTTAGCTCCAGGGTTAAGTCCCTGATCCATGAACTGGGGTTGGCCCACGTTGCTGGAGCTCGAGTTGGCGACGACAGGGTTCGGGGAATCTCAGGCGGGGAGCGCCGGAGAGTCTCAATTGGAGTCGAGGTAATACATGACCCTAGAGTGCTCATTCTTGATGAGCCCACTTCGGGTCTTGATAGTACTTCGGCTCTTCAGATCATTGACATGGTCAAGACCATGGCCGAGACCTGGGGTCGAACCATTATCCTCAGTATCCACCAGCCCGGGTTCAGAATAATTAAGCTCTTCAACTCCATTCTCCTACTCGCTAATGGCTCAGTTTTGCACCACGGGACTGTTGACGCTCTCAGTTTCAACTTAAGGCTAATGGGTCTTCAACCCCCTCTTCATGTCAATATAGTCGAATTCGCACTCGACTCGATCGAAAGAATTCAACAAGAAAATTTACCAACTACACTGCTTACATCACCAACAACTACTCCACAAAATAGAAGAGGTGATGAAGTGATAGACGAAGAACAAATTGTCGATGTGGGGACAGATACCATCCCCATTGGTTTCGCAAATTCAAGAATCCGCGAAACCCTAATTCTTACTCACCGGTTCTCAAAAAACATTTTCCGAACAAAGGAGCTTTTCGCTTGCCGGACCATAACAATGCTAATCGCGGGTTTGGTTTTGGGTTCCATTTTTTACGATCTAAAAGATGATTTAGTTGGTGCCCGAGAAAGGGTTGGCTTATTCGCGTTCATACTAACTTTTCTTTTAACAACCACGGTCGAAGCTTTACCGGTGTTTCTACAGGAGAGAGAAATACTAATGAAGGAAACATCATGTGGGAGCTATAGGGTTTCATCTTATGCTATAGCCAATGGTCTAGTTTACTTGCCATTTCTATTGATTCTCGCCGTTCTATTTGCTTTGCCATTGTATTGGCTTGTCGGTCTTAACCGGAGTTTCCCTGCTTTCGCCCAGTTTCTCGTGCTCGTTTGGCTCATTCTATACACGGCCAACTCGGTGGTGATATGTTTCAGCGCTTTGGTGCCAAATTTCATAGTGGGTAACTCGGTGATTGCAGGCGTAATGGGTTCATTCTTCTTGTTCTCGGGCTACTTTGTGTCGAAAAATGGGATCCCAAGTTATTGGATTTTTATGCATTATATCTCTCTTTTTAAGTACCCATTTGAAGGGTTTTTGATAAATGAGTTCTCTGGGAATGGCAAGTGTTTGGAGTATATGTTTGGGGGGTGTGTGGTGAGTGGAGAAGATTTGCTTAGAGAAGAAGGGTACTATGGCGAAGATAGTAGTAAGTGGAGGAATTTGGTGATAATGGTTGGTTTTATTTTGGTTTATAGGTTTGTTTCTTATGTTATTCTTAGGGTTAGGTGCTCTCAAAGAGGACTCAAAGGAGCCTTTTCTTGA

Network for GWHGAAZE016821

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.28	ABC_tran	53	201	3.30E-29
PF01061.25	ABC2_membrane	340	548	1.70E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05681	ABCG2, CD338	ABC transporters	map02010
K05681	ABCG2, CD338	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.814
	SRR3591706	second leaf	34.709
	SRR3591707	mature leaf	20.656
	SRR3591708	Shoot apex	36.830
	SRR3591709	Stem	21.982
	SRR3591710	White floral bud	12.733
	SRR3591711	White flower	9.861
	SRR3591712	Green floral bud	10.201
	SRR3591713	Yellow flower	1.835
SRP173429	SRR8316895	Juvenile bud stage	4.356
	SRR8316896	Juvenile bud stage	2.719
	SRR8316897	Juvenile bud stage	1.965
	SRR8316894	Third green stage	4.994
	SRR8316900	Third green stage	10.672
	SRR8316901	Third green stage	7.405
	SRR8316898	Complete white stage	2.312
	SRR8316899	Complete white stage	19.821
	SRR8316903	Complete white stage	4.763
	SRR8316902	Silver flowering stage	3.348
	SRR8316904	Silver flowering stage	4.096
	SRR8316905	Silver flowering stage	0.985
	SRR8316906	Gold flowering stage	5.203
	SRR8316907	Gold flowering stage	7.539
	SRR8316908	Gold flowering stage	6.502
SRP132670	SRR6706286	Control	29.818
	SRR6706287	Light intensity 50%	29.070
	SRR6706288	Light intensity 20%	32.345
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.541
	CNS0095593	Slightly white alabastrum(diploid) 2	6.498
	CNS0095594	Slightly white alabastrum(diploid) 3	4.765
	CNS0095595	Whole white alabastrum(diploid) 2	5.320
	CNS0095596	Whole white alabastrum(diploid) 3	5.306
	CNS0095597	Whole white alabastrum(diploid) 4	2.844
	CNS0095598	Silvery flower (diploied) 1	9.535
	CNS0095599	Silvery flower (diploied) 2	4.421
	CNS0095600	Silvery flower (diploied) 3	4.600
	CNS0095601	Golden flower (diploid) 1	9.623
	CNS0095602	Golden flower (diploid) 2	6.937
	CNS0095603	Golden flower (diploid) 3	7.724
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.684
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.695
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.622
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.845
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.412
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.556
	CNS0095610	Silvery flower (tetraploid) 1	1.965
	CNS0095611	Silvery flower (tetraploid) 2	6.320
	CNS0095612	Silvery flower (tetraploid) 3	0.314
	CNS0095613	Golden flower (tetraploid) 1	0.124
	CNS0095614	Golden flower (tetraploid) 2	1.869
	CNS0095615	Golden flower (tetraploid) 3	2.395
CRA001975	CRR073297	Stem 1	4.142
	CRR073298	Stem 2	3.284
	CRR073299	Stem 3	4.312
	CRR073300	Leaf 1	5.891
	CRR073301	Leaf 2	7.436
	CRR073302	Leaf 3	7.615
	CRR073303	Juvenile bud 1	9.156
	CRR073304	Juvenile bud 2	6.366
	CRR073305	Juvenile bud 3	9.999
	CRR073306	Third green 1	7.753
	CRR073307	Third green 2	8.657
	CRR073308	Third green 3	9.764
	CRR073309	Second white 1	6.217
	CRR073310	Second white 2	2.891
	CRR073311	Second white 3	8.485
	CRR073312	Silver flowering 1	4.071
	CRR073313	Silver flowering 2	1.780
	CRR073314	Silver flowering 3	2.398
	CRR073315	Gold flowering 1	0.297
	CRR073316	Gold flowering 2	0.028
	CRR073317	Gold flowering 3	0.527
	CRR073318	Tawny withering 1	3.823
	CRR073319	Tawny withering 2	0.524
	CRR073320	Tawny withering 3	1.424