Gene detail

Detail information of GWHGAAZE016845

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAJ38386.1	1.49435E-41	alpha tubulin [Plantago major]
Swissprot	tr\|P33629\|TBA_PRUDU	7E-42	Tubulin alpha chain
trEMBL	tr\|Q1EMQ0\|Q1EMQ0_PLAMJ	6E-42	Alpha tubulin {ECO:0000313\|EMBL:CAJ38386.1} (Fragment)
TAIR10	AT5G19770.1	2E-28	tubulin alpha-3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	83995652	83995894	-
GWHAAZE00000004	mRNA	83995652	83995894	-
GWHAAZE00000004	exon	83995652	83995894	-
GWHAAZE00000004	CDS	83995652	83995894	-

Transcript Sequence
>GWHTAAZE016865 ATGTTCGAGGGCGGTTGTATGATATCGAACTCGACCAGCGTTGCTGAGGTGTTCTTGAGGATAGATCATAAGTTTGATTTGATGTATGCGAAGAGAGCATTTGTGCATTGGTATGTTGGTGAAGGTATGGAGGAAGGGGAGTTTTCAGAGGCTAGAGAGGACTTGGCTGCACTTGAGAAGGATTATGAGGAAGTTGGGCTTGAATCTGCAGAAGGGGAAGAAGATGATGGTGAAGAGTACTAG

Network for GWHGAAZE016845

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07374	TUBA	Phagosome	map04145
		Apoptosis	map04210
		Tight junction	map04530
		Gap junction	map04540

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0005200	molecular_function	structural constituent of cytoskeleton
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	82.604
	SRR3591706	second leaf	23.577
	SRR3591707	mature leaf	2.032
	SRR3591708	Shoot apex	287.018
	SRR3591709	Stem	50.562
	SRR3591710	White floral bud	5.466
	SRR3591711	White flower	2.106
	SRR3591712	Green floral bud	12.084
	SRR3591713	Yellow flower	0.045
SRP173429	SRR8316895	Juvenile bud stage	0.004
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.154
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.151
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.055
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.156
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.039