Detail information of GWHGAAZE016862


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006441392.18.88186E-52hypothetical protein CICLE_v10022594mg [Citrus clementina]
trEMBLtr|A0A067EXA0|A0A067EXA0_CITSI3E-52Uncharacterized protein {ECO:0000313|EMBL:KDO59688.1}
TAIR10AT1G17880.19E-21basic transcription factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8431554284317474-
GWHAAZE00000004mRNA8431554284317474-
GWHAAZE00000004exon8431554284315691-
GWHAAZE00000004exon8431643784316493-
GWHAAZE00000004exon8431657584316734-
GWHAAZE00000004exon8431740784317474-
GWHAAZE00000004CDS8431740784317474-
GWHAAZE00000004CDS8431657584316734-
GWHAAZE00000004CDS8431643784316493-
GWHAAZE00000004CDS8431554284315691-
Transcript Sequence

Network for GWHGAAZE016862

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01849.19NAC36611.00E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01527EGD1, BTF3 Apoptosis - fly map04214

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.018
SRR3591706second leaf2.821
SRR3591707mature leaf1.525
SRR3591708Shoot apex4.621
SRR3591709Stem2.775
SRR3591710White floral bud2.472
SRR3591711White flower3.026
SRR3591712Green floral bud4.433
SRR3591713Yellow flower2.099
SRP173429 SRR8316895Juvenile bud stage 0.085
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.019
SRR8316900Third green stage 0.121
SRR8316901Third green stage 0.096
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.709
SRR8316903Complete white stage 0.210
SRR8316902Silver flowering stage0.032
SRR8316904Silver flowering stage0.036
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.034
SRP132670SRR6706286Control0.049
SRR6706287Light intensity 50%0.085
SRR6706288Light intensity 20%0.140
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.349
CNS0095593Slightly white alabastrum(diploid) 20.135
CNS0095594Slightly white alabastrum(diploid) 30.308
CNS0095595Whole white alabastrum(diploid) 20.087
CNS0095596Whole white alabastrum(diploid) 30.158
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.046
CNS0095599Silvery flower (diploied) 20.018
CNS0095600Silvery flower (diploied) 30.264
CNS0095601Golden flower (diploid) 10.041
CNS0095602Golden flower (diploid) 20.006
CNS0095603Golden flower (diploid) 30.102
CNS0095604Slightly white alabastrum(tetraploid) 10.007
CNS0095605Slightly white alabastrum(tetraploid) 20.052
CNS0095606Slightly white alabastrum(tetraploid) 30.178
CNS0095607Whole white alabastrum(tetraploid) 10.078
CNS0095608Whole white alabastrum(tetraploid) 20.067
CNS0095609Whole white alabastrum(tetraploid) 30.089
CNS0095610Silvery flower (tetraploid) 10.038
CNS0095611Silvery flower (tetraploid) 20.090
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.016
CNS0095614Golden flower (tetraploid) 20.042
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.106
CRR073298Stem 20.122
CRR073299Stem 30.021
CRR073300Leaf 10.098
CRR073301Leaf 20.038
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.131
CRR073304Juvenile bud 20.582
CRR073305Juvenile bud 30.227
CRR073306Third green 10.014
CRR073307Third green 20.041
CRR073308Third green 30.000
CRR073309Second white 10.037
CRR073310Second white 20.012
CRR073311Second white 30.009
CRR073312Silver flowering 10.019
CRR073313Silver flowering 20.077
CRR073314Silver flowering 30.023
CRR073315Gold flowering 10.094
CRR073316Gold flowering 20.085
CRR073317Gold flowering 30.230
CRR073318Tawny withering 10.055
CRR073319Tawny withering 20.105
CRR073320Tawny withering 30.000