Gene detail

Detail information of GWHGAAZE016870

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011022984.1	PREDICTED: phosphatidylinositol 4-kinase beta 1-like isoform X2 [Populus euphratica]
Swissprot	tr\|Q0WPX9\|P4KB2_ARATH	Phosphatidylinositol 4-kinase beta 2
trEMBL	tr\|B9RU39\|B9RU39_RICCO	Phosphatidylinositol 4-kinase, putative {ECO:0000313\|EMBL:EEF45158.1}
TAIR10	AT5G09350.1	phosphatidylinositol 4-OH kinase beta2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	84532613	84542706	+
GWHAAZE00000004	mRNA	84532613	84542706	+
GWHAAZE00000004	exon	84532613	84533992	+
GWHAAZE00000004	exon	84540251	84540437	+
GWHAAZE00000004	exon	84541653	84541785	+
GWHAAZE00000004	exon	84542190	84542706	+
GWHAAZE00000004	CDS	84532613	84533992	+
GWHAAZE00000004	CDS	84540251	84540437	+
GWHAAZE00000004	CDS	84541653	84541785	+
GWHAAZE00000004	CDS	84542190	84542706	+

Transcript Sequence
>GWHTAAZE016890 ATGGTGAGGCTATTGGGATTGACTCGGGGGGAATCGGACGAGTCACCGCGAGAGATCACTCGGACCATACCGACGAGTGAGAGTAGTGGAGAGAGCGGTTGGCTTATTCGCTTCTTTGACTCGGCTTTCTTCTGCGAGTGGATCGCTGTTAGTTACCTGTACAAGCATGATCACCCCGGTGTTAGGGACTACCTTTGTAATAGAATGTACACTCTCCCACTATCCGGCATTGAGAGCTACTTGTTTCAGATATGTTACATGTTGGTTCACAAGCCCAGTCCATCGTTGGACAAATTTGTTATCGATATATGCTCAAAGTCGCTACAAATAGCTTTGAAAGTCCACTGGTTTTTAATGGCGGAGCTTGAGGACTCAGATGATAACGAGGGGATCAGTAGAATTCAAGAGAAGTGTCAGATTGCAGCGACTTTGATTGGCGAGTGGACACCTTTGGTTCGGCCCCCAAGTTCCGTGGGCAAAAACCAAGTACTTAACAAGTTACTGGCATCAAAATCGAGGTTGTTGTCACTAACTTCATCGCCCCCCACTCAGCGGTCGTTTTCATTCTCGCCCTCGTCGGCGAACTCCTTGCCGGATGATGGTAGCAAAGTATCCTCTGAGGAGAGTAAGATTTTCAAAAAATTTATTCCGAGTCCTAAAGTACGGGATGCATTACTTTTCAGAAAATCAGTGGATAAAGATGATGAGGAACCGGACAAGGATGGCTTCTTCAAGAGGCTTCTAAGAGATAGTAAGGATGAGGATGTCCGGAAATCAGCTGATAAAGATGAAGAGGATACTGAGAAGGATGGGTTCTTCCGGCGGCTTTTAAGAGATAGTAGGGATGACGACGAGGAGGTCACATCGAGCTCTGAGGGATTTTTTAAACGGTTATTCCGTGATGGTAAAGTTGATTCGGAGGAAAAAATACTTTCGAAATCCATGGAGGAAGATGAGAAAGAAGGGTTTTTCCGAAAGTTTTTCAAGGATAAATTCGAGGACAAAAAGGATGGAGCTGATAAAAATGAAGTTGAGGAAAAGTTTATGAAGTCTGCTTTGGATGATGAAAAGGACGGGTTCTTTCGAAAATTCTTTAAAGAAAAACTTGAGGAGAAAAAGGATGGGATTGATAGGACAGATGAAGAACTGAAGGGGCATGCCAATGGTGAAGAAGAAGAGCCTTCAGAGTTTTCATTGTTCCGTAGATTGTTTCGTGTGCATCCGGAAGATTCCAGAACTGCAGCATCCAATGAGAACACCAACAATGGCAGCTTCCTTGAAAGCAGTCCAGGGACGGAGAAGTTCTTCCGCAAGCTTTTTAAGGATCGCGAACGATCTATGGAAGATTCAGAGCTATTTGGATCAAAGAAAAACAAAGAGAATCGGCCTGGTTCACCAAAGCAGTGGAATGAGAAAATGAATGCTAAGCCTCCTCTTCCAAATAGTGCGGAATCACAGTTTAGGAAAGGGACGTACCATGAGTCACTTGATTTTGTACATTCGCTATGTGAAACATCATATGGCTTAGTAGATGTATTTCCAGTTGAAGACCGGAAAAGTGCACTTCGAGTGTGCTTTCCAATGGGAAAAGGGATGTACCGTGTAGTTCATATACCTGAAGATGAAGCCGTTCTTTTGAATTCTAGAGAAAAGGCACCTTACCTGATCTGTGTTGAAGTTTTGAAAAGTGAAAACCCAAGCAACACAAAGGATACATCTAGCACTCAAAAACTTTCAAAAGGTGGAATTCCTTTGGCAAATGGTGATGCATTACTACCTAAGCCTCCTCCTTGGGCTTATCCTTTGTGGACCGGACCGGACATGTACCGTAGTGGTTATGATAGGATGTCGAGATCTACTTCTGAAGCCATTGACCAGGCAATGGCTCAGTTGTGGGAGTCAAAAATGAAATTCGTTCGCGTGAGTCTGTCAGTGGAGAAGCAATTGCTTGACCAATCGAAAACAATTGAAGTTGCCGATTCAAACTGTGGCATTCATTGTCGCGGTCTTCCTCGATCTTCGGTCCCTTCGGAGGATTTTGTAAATAGCTGTCAATGTGGAGAAGATGGTAATGCTTTGGAATGGGTGAGGGTCATCTTGACCGCAGATCCTGGGGTCAGGATGGACGATGTGGAGGATCAAGAGCCACCTCGTCGGAAGGAGCACCGCCGTGTTCCGAGTACTGTACTTTTTGAGGAAGTAAAGGTGGGCCTTTGA

Network for GWHGAAZE016870

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19801	PI4KB	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.290
	SRR3591706	second leaf	8.507
	SRR3591707	mature leaf	10.746
	SRR3591708	Shoot apex	8.468
	SRR3591709	Stem	17.804
	SRR3591710	White floral bud	19.047
	SRR3591711	White flower	18.947
	SRR3591712	Green floral bud	12.593
	SRR3591713	Yellow flower	17.945
SRP173429	SRR8316895	Juvenile bud stage	8.174
	SRR8316896	Juvenile bud stage	10.366
	SRR8316897	Juvenile bud stage	4.228
	SRR8316894	Third green stage	4.547
	SRR8316900	Third green stage	11.205
	SRR8316901	Third green stage	12.147
	SRR8316898	Complete white stage	6.173
	SRR8316899	Complete white stage	16.885
	SRR8316903	Complete white stage	13.613
	SRR8316902	Silver flowering stage	7.519
	SRR8316904	Silver flowering stage	15.395
	SRR8316905	Silver flowering stage	6.227
	SRR8316906	Gold flowering stage	18.086
	SRR8316907	Gold flowering stage	18.203
	SRR8316908	Gold flowering stage	19.439
SRP132670	SRR6706286	Control	13.644
	SRR6706287	Light intensity 50%	14.063
	SRR6706288	Light intensity 20%	14.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.133
	CNS0095593	Slightly white alabastrum(diploid) 2	2.286
	CNS0095594	Slightly white alabastrum(diploid) 3	4.178
	CNS0095595	Whole white alabastrum(diploid) 2	4.226
	CNS0095596	Whole white alabastrum(diploid) 3	1.904
	CNS0095597	Whole white alabastrum(diploid) 4	3.018
	CNS0095598	Silvery flower (diploied) 1	6.773
	CNS0095599	Silvery flower (diploied) 2	6.566
	CNS0095600	Silvery flower (diploied) 3	20.699
	CNS0095601	Golden flower (diploid) 1	4.697
	CNS0095602	Golden flower (diploid) 2	20.125
	CNS0095603	Golden flower (diploid) 3	19.007
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.807
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.985
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.649
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.472
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.811
	CNS0095610	Silvery flower (tetraploid) 1	22.420
	CNS0095611	Silvery flower (tetraploid) 2	21.964
	CNS0095612	Silvery flower (tetraploid) 3	19.501
	CNS0095613	Golden flower (tetraploid) 1	7.657
	CNS0095614	Golden flower (tetraploid) 2	16.638
	CNS0095615	Golden flower (tetraploid) 3	22.197
CRA001975	CRR073297	Stem 1	15.363
	CRR073298	Stem 2	15.423
	CRR073299	Stem 3	11.744
	CRR073300	Leaf 1	17.140
	CRR073301	Leaf 2	14.145
	CRR073302	Leaf 3	11.207
	CRR073303	Juvenile bud 1	10.582
	CRR073304	Juvenile bud 2	10.525
	CRR073305	Juvenile bud 3	16.548
	CRR073306	Third green 1	9.640
	CRR073307	Third green 2	8.758
	CRR073308	Third green 3	11.539
	CRR073309	Second white 1	5.521
	CRR073310	Second white 2	12.126
	CRR073311	Second white 3	15.515
	CRR073312	Silver flowering 1	10.800
	CRR073313	Silver flowering 2	9.837
	CRR073314	Silver flowering 3	14.673
	CRR073315	Gold flowering 1	3.856
	CRR073316	Gold flowering 2	7.544
	CRR073317	Gold flowering 3	4.105
	CRR073318	Tawny withering 1	11.884
	CRR073319	Tawny withering 2	7.648
	CRR073320	Tawny withering 3	11.075