Gene detail

Detail information of GWHGAAZE016878

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011022977.1	PREDICTED: alcohol dehydrogenase [Populus euphratica]
Swissprot	tr\|P48977\|ADH_MALDO	Alcohol dehydrogenase
trEMBL	tr\|A9PGZ0\|A9PGZ0_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEE90350.2}
TAIR10	AT1G77120.1	alcohol dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	84808249	84811970	+
GWHAAZE00000004	mRNA	84808249	84811970	+
GWHAAZE00000004	exon	84808249	84808404	+
GWHAAZE00000004	exon	84808552	84808598	+
GWHAAZE00000004	exon	84808995	84809320	+
GWHAAZE00000004	exon	84809587	84809669	+
GWHAAZE00000004	exon	84809748	84809823	+
GWHAAZE00000004	exon	84810045	84810106	+
GWHAAZE00000004	exon	84810220	84810315	+
GWHAAZE00000004	exon	84810409	84810582	+
GWHAAZE00000004	exon	84811581	84811970	+
GWHAAZE00000004	CDS	84808249	84808404	+
GWHAAZE00000004	CDS	84808552	84808598	+
GWHAAZE00000004	CDS	84808995	84809320	+
GWHAAZE00000004	CDS	84809587	84809669	+
GWHAAZE00000004	CDS	84809748	84809823	+
GWHAAZE00000004	CDS	84810045	84810106	+
GWHAAZE00000004	CDS	84810220	84810315	+
GWHAAZE00000004	CDS	84810409	84810582	+
GWHAAZE00000004	CDS	84811581	84811697	+
GWHAAZE00000004	three_prime_UTR	84811698	84811970	+

Transcript Sequence
>GWHTAAZE016898 ATGTGTGTGATTGTTGCAGCTGCGGTGGCATGGGAAGCCGGAAAGCCGCTAGTGATTGAAGAGGTGGACGTGGCACCTCCACAAGCCATGGAGGTCCGCGTGAAAATCCTCTTCACCTCGCTATGCCACACTGACGTTTACTTTTGGGAAGCCAAGGGACAAACCCCGGTGTTTCCTCGCATATTTGGGCATGAAGCTGGAGGGATTGTGGAGAGTGTTGGTGAAGGTGTGACGGATTTGAAACCCGGGGATCATGTTCTTCCAGTATTTACGGGAGAGTGCAAAGAGTGTCGCCATTGCAAGTCGGAGGAAAGTAATATGTGTGACCTCCTGAGGATAAACACGGATCGTGGGGTTATGTTGAATGATGGCAAGTCAAGGTTCTCGATCAACGGTGAACCCATTTTTCATTTTGTTGGAACCTCCACCTTTAGTGAATACACCGTGGTTCACGTTGGTTGTCTTGCAAAGATCAACCCTGCCGCTCCCCTTGACAAAGTTTGCGTTCTTAGTTGTGGAATTTCTACAGGTCTTGGTGCCAGTTTGAATGTCGCAAAACCGAAAAAAGGTTCAACAGTAGCCATTTTCGGACTTGGAGCTGTTGGTCTTGCTGCTGCCGAAGGAGCTAGAATTTCTGGTGCTTCAAGGATTATTGGAGTTGATCTGAATTCAAATAGATTCGAAGCATCCAAGAAATTTGGAATCACGGACTTTGTCAATCCGAAAGATCATGCCAAGCCTGTTCAAGAGGTGATTGCTGAGATGACTGATGGGGGAGTTGACCGAAGCATAGAGTGTACCGGAAGTATCAGTGCGATGATCTCTGCTTTTGAATGTGTTCATGACGGATGGGGTGTTGCAGTTCTTGTGGGGGTGCCAAACAAGGATGATGCATTCAAAACGCATCCAATGAATCTATTGAATGAAAGAACTTTGAAGGGTACCTTCTTTGGCAACTATAAGCCACGGTCCGACATTCCCTCGGTTGTGGAAAAATACATGAACAAGGCAAGATTCAATGAGCTAGAATTGGAAAAGTTCATAACACATGAAGTTCCATTCTCAGAAATAAACAAGGCCTTTGAGTATATGCTCAAAGGGGACGGCCTTAGGTGCATTATCCGCATGGATGGTTAAGGTGCTGTTTGGGTATCAGGAAGAGATTATTTACCCATCTGGTCTCTTTTGAGTGTTAAAAAAAAACTCTGTTAATGTAATATTCTTATTGATGACGTATGTGACATTATAACTTTGTATTCGTTTTTTCTTTTTCAGTTTTAATCAGAGAATGGGTGTGCATCTGAATTTTGTATGCAACTTTCTGATGCCTATCAGAATGAATAAACAAGTTTGTGTTGAGTCTGACGTGTGTTTCTCTAGCTACTTGTGAAACATATTTTTTTCATAAAG

Network for GWHGAAZE016878

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	31	153	3.10E-23
PF00107.27	ADH_zinc_N	200	328	5.40E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18857	ADH1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Tyrosine metabolism	map00350

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	105.316
	SRR3591706	second leaf	15.390
	SRR3591707	mature leaf	9.572
	SRR3591708	Shoot apex	37.204
	SRR3591709	Stem	121.773
	SRR3591710	White floral bud	5.766
	SRR3591711	White flower	6.619
	SRR3591712	Green floral bud	6.563
	SRR3591713	Yellow flower	1.005
SRP173429	SRR8316895	Juvenile bud stage	24.210
	SRR8316896	Juvenile bud stage	22.144
	SRR8316897	Juvenile bud stage	19.469
	SRR8316894	Third green stage	15.793
	SRR8316900	Third green stage	43.618
	SRR8316901	Third green stage	37.568
	SRR8316898	Complete white stage	20.309
	SRR8316899	Complete white stage	28.509
	SRR8316903	Complete white stage	19.367
	SRR8316902	Silver flowering stage	10.240
	SRR8316904	Silver flowering stage	17.616
	SRR8316905	Silver flowering stage	7.333
	SRR8316906	Gold flowering stage	12.463
	SRR8316907	Gold flowering stage	24.730
	SRR8316908	Gold flowering stage	27.125
SRP132670	SRR6706286	Control	39.891
	SRR6706287	Light intensity 50%	39.432
	SRR6706288	Light intensity 20%	42.316
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.202
	CNS0095593	Slightly white alabastrum(diploid) 2	32.937
	CNS0095594	Slightly white alabastrum(diploid) 3	26.977
	CNS0095595	Whole white alabastrum(diploid) 2	22.053
	CNS0095596	Whole white alabastrum(diploid) 3	33.909
	CNS0095597	Whole white alabastrum(diploid) 4	23.019
	CNS0095598	Silvery flower (diploied) 1	112.442
	CNS0095599	Silvery flower (diploied) 2	110.651
	CNS0095600	Silvery flower (diploied) 3	30.334
	CNS0095601	Golden flower (diploid) 1	74.323
	CNS0095602	Golden flower (diploid) 2	44.539
	CNS0095603	Golden flower (diploid) 3	42.856
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.034
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.532
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.311
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.064
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.467
	CNS0095610	Silvery flower (tetraploid) 1	6.645
	CNS0095611	Silvery flower (tetraploid) 2	12.865
	CNS0095612	Silvery flower (tetraploid) 3	10.477
	CNS0095613	Golden flower (tetraploid) 1	15.356
	CNS0095614	Golden flower (tetraploid) 2	6.118
	CNS0095615	Golden flower (tetraploid) 3	11.587
CRA001975	CRR073297	Stem 1	59.225
	CRR073298	Stem 2	49.984
	CRR073299	Stem 3	51.335
	CRR073300	Leaf 1	32.062
	CRR073301	Leaf 2	32.068
	CRR073302	Leaf 3	52.081
	CRR073303	Juvenile bud 1	52.217
	CRR073304	Juvenile bud 2	29.254
	CRR073305	Juvenile bud 3	38.470
	CRR073306	Third green 1	19.894
	CRR073307	Third green 2	19.124
	CRR073308	Third green 3	16.923
	CRR073309	Second white 1	13.102
	CRR073310	Second white 2	6.084
	CRR073311	Second white 3	6.888
	CRR073312	Silver flowering 1	6.937
	CRR073313	Silver flowering 2	7.961
	CRR073314	Silver flowering 3	16.652
	CRR073315	Gold flowering 1	16.820
	CRR073316	Gold flowering 2	20.727
	CRR073317	Gold flowering 3	12.936
	CRR073318	Tawny withering 1	288.249
	CRR073319	Tawny withering 2	120.991
	CRR073320	Tawny withering 3	389.653