Gene detail

Detail information of GWHGAAZE016880

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006382856.1	0	hypothetical protein POPTR_0005s06140g [Populus trichocarpa]
Swissprot	tr\|P48977\|ADH_MALDO	0	Alcohol dehydrogenase
trEMBL	tr\|U5GAV5\|U5GAV5_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP60653.1}
TAIR10	AT1G77120.1	2E-175	alcohol dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	84844266	84847509	+
GWHAAZE00000004	mRNA	84844266	84847509	+
GWHAAZE00000004	exon	84844266	84844421	+
GWHAAZE00000004	exon	84844585	84844631	+
GWHAAZE00000004	exon	84845040	84845365	+
GWHAAZE00000004	exon	84845625	84845695	+
GWHAAZE00000004	exon	84845793	84845868	+
GWHAAZE00000004	exon	84845951	84845955	+
GWHAAZE00000004	exon	84846284	84846379	+
GWHAAZE00000004	exon	84846477	84846638	+
GWHAAZE00000004	exon	84847242	84847509	+
GWHAAZE00000004	CDS	84844266	84844421	+
GWHAAZE00000004	CDS	84844585	84844631	+
GWHAAZE00000004	CDS	84845040	84845365	+
GWHAAZE00000004	CDS	84845625	84845695	+
GWHAAZE00000004	CDS	84845793	84845868	+
GWHAAZE00000004	CDS	84845951	84845955	+
GWHAAZE00000004	CDS	84846284	84846379	+
GWHAAZE00000004	CDS	84846477	84846638	+
GWHAAZE00000004	CDS	84847242	84847358	+
GWHAAZE00000004	three_prime_UTR	84847359	84847509	+

Transcript Sequence
>GWHTAAZE016900 ATGCATGCACTCATTACAGCTGCGGTGGCATGGGAAGCTGGAAAGCCACTAGTGATAGAAGAGGTGGAGGTGGCGCCTCCTCAAGCCATGGAGGTTCGCGTGAAAATCCTCTTCACCTCCCTCTGCCACACCGACGTTTACTTTTGGGAAGCCAAGGGACAAACCCCCATGTTTCCTCGCATATTTGGGCATGAAGCTGGAGGGATTGTGGAGAGCATTGGTGAGGGTGTAACGGATTTGAAACCCGGGGATCATGTTCTTCCAGTATTCACGGGAGAGTGCAAAGAGTGTCGACATTGCAAGTCGGAGGAGAGTAATATGTGTGATCTCTTGAGGATAAACACGGACCGTGGGGTGATGTTGAATGATGGCAAGTCAAGATTCTCGATCAACGGTGAACCCATTTTCCATTTTGTTGGAACCTCAACCTTTAGTGAATACACTGTGGTTCACGTTGGTTGTCTTGCGAAGATCAACCCTGCTGCTCCACTTGACAAAGTTTGCGTTCTTAGTTGTGGAATTTCTACAGGTCTTGGTGCCACTTTGAATGTCGCAAAACCGAAAAAAGGTTCAACCGTAGCCATTTTTGGACTCGGAGCTGCTGCTGAAGGGGCTAGAATTTCTGGTGCTTCAAGGATTATTGGAGTTGATCTGAATTCAAACAGATTTGAAGCATTCTTGGTGATTGCTGAGATGACTGACGGGGGAGTTGACCGAAGTGTAGAGTGTACGGGTAGTATCAGTGCGATGATCTCTGCGTTTGAATGTGTTCATGATGGATGGGGAGTTGCTGTGCTTGTGGGGGTGCCAAACAAAGATGACGCATTCAAAACGCATCCAATGAATCTGTTGAATGAAAGAACTTTGAAGGGCACCTTCTTCGGCAACTATAAGCCACGGTCCGACATTCCCTCGGTTGTGGAAAAATACATGAACAAGGAGCTTGAACTGGAAAAATTCATCACACATGAAGTCCCATTCTCAGAAATAAACAAGGCCTTTGAGTATATGCTAAAAGGGGATGGCCTCAGGTGCATTATTCGCATGGATGGTTAGTGCTGTTTGGGTATCAAGTAGAGATTATTAATCCAGTTGGTCGCGTTGAGTCTTTAAATAAACTTTGTGTTCATGTGTTTTTTCTTTTTGCTTTTGTTTCAAGTGAGGAAGATGGTGTTGTCTGTCTTGCGTTTGTGCATAGAAAAAAGAG

Network for GWHGAAZE016880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	31	153	4.90E-23
PF00107.27	ADH_zinc_N	229	305	2.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18857	ADH1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Tyrosine metabolism	map00350

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.165
	SRR3591706	second leaf	16.777
	SRR3591707	mature leaf	15.242
	SRR3591708	Shoot apex	31.157
	SRR3591709	Stem	90.486
	SRR3591710	White floral bud	44.946
	SRR3591711	White flower	61.606
	SRR3591712	Green floral bud	60.543
	SRR3591713	Yellow flower	24.802
SRP173429	SRR8316895	Juvenile bud stage	25.538
	SRR8316896	Juvenile bud stage	37.652
	SRR8316897	Juvenile bud stage	22.628
	SRR8316894	Third green stage	22.100
	SRR8316900	Third green stage	79.683
	SRR8316901	Third green stage	66.365
	SRR8316898	Complete white stage	30.731
	SRR8316899	Complete white stage	92.424
	SRR8316903	Complete white stage	32.885
	SRR8316902	Silver flowering stage	34.685
	SRR8316904	Silver flowering stage	47.717
	SRR8316905	Silver flowering stage	19.426
	SRR8316906	Gold flowering stage	44.874
	SRR8316907	Gold flowering stage	56.627
	SRR8316908	Gold flowering stage	61.517
SRP132670	SRR6706286	Control	131.391
	SRR6706287	Light intensity 50%	138.083
	SRR6706288	Light intensity 20%	170.615
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.185
	CNS0095593	Slightly white alabastrum(diploid) 2	47.232
	CNS0095594	Slightly white alabastrum(diploid) 3	33.845
	CNS0095595	Whole white alabastrum(diploid) 2	44.685
	CNS0095596	Whole white alabastrum(diploid) 3	55.035
	CNS0095597	Whole white alabastrum(diploid) 4	53.603
	CNS0095598	Silvery flower (diploied) 1	69.097
	CNS0095599	Silvery flower (diploied) 2	45.076
	CNS0095600	Silvery flower (diploied) 3	57.531
	CNS0095601	Golden flower (diploid) 1	34.789
	CNS0095602	Golden flower (diploid) 2	50.191
	CNS0095603	Golden flower (diploid) 3	50.144
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.977
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.090
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.549
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.390
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.986
	CNS0095609	Whole white alabastrum(tetraploid) 3	55.075
	CNS0095610	Silvery flower (tetraploid) 1	58.523
	CNS0095611	Silvery flower (tetraploid) 2	54.995
	CNS0095612	Silvery flower (tetraploid) 3	31.922
	CNS0095613	Golden flower (tetraploid) 1	62.232
	CNS0095614	Golden flower (tetraploid) 2	53.095
	CNS0095615	Golden flower (tetraploid) 3	18.927
CRA001975	CRR073297	Stem 1	80.390
	CRR073298	Stem 2	80.473
	CRR073299	Stem 3	80.737
	CRR073300	Leaf 1	118.337
	CRR073301	Leaf 2	110.104
	CRR073302	Leaf 3	155.200
	CRR073303	Juvenile bud 1	202.634
	CRR073304	Juvenile bud 2	97.373
	CRR073305	Juvenile bud 3	173.352
	CRR073306	Third green 1	49.471
	CRR073307	Third green 2	46.958
	CRR073308	Third green 3	50.243
	CRR073309	Second white 1	15.206
	CRR073310	Second white 2	11.914
	CRR073311	Second white 3	6.977
	CRR073312	Silver flowering 1	6.641
	CRR073313	Silver flowering 2	6.698
	CRR073314	Silver flowering 3	16.488
	CRR073315	Gold flowering 1	19.671
	CRR073316	Gold flowering 2	15.127
	CRR073317	Gold flowering 3	17.443
	CRR073318	Tawny withering 1	198.974
	CRR073319	Tawny withering 2	167.466
	CRR073320	Tawny withering 3	196.986