Gene detail

Detail information of GWHGAAZE016881

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007048336.1	0	Transducin/WD40 repeat-like superfamily protein isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9SXY1\|FAS2_ARATH	0	Chromatin assembly factor 1 subunit FAS2
trEMBL	tr\|A0A061DRA8\|A0A061DRA8_THECC	0	Transducin/WD40 repeat-like superfamily protein isoform 1 {ECO:0000313\|EMBL:EOX92493.1}
TAIR10	AT5G64630.2	1E-175	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	84863392	84872310	+
GWHAAZE00000004	mRNA	84863392	84872310	+
GWHAAZE00000004	exon	84863392	84863505	+
GWHAAZE00000004	exon	84864399	84864510	+
GWHAAZE00000004	exon	84866922	84866948	+
GWHAAZE00000004	exon	84867043	84867115	+
GWHAAZE00000004	exon	84867338	84867441	+
GWHAAZE00000004	exon	84867896	84868107	+
GWHAAZE00000004	exon	84868190	84868316	+
GWHAAZE00000004	exon	84870040	84870184	+
GWHAAZE00000004	exon	84870566	84870660	+
GWHAAZE00000004	exon	84871032	84871194	+
GWHAAZE00000004	exon	84871354	84871507	+
GWHAAZE00000004	exon	84872128	84872310	+
GWHAAZE00000004	CDS	84863392	84863505	+
GWHAAZE00000004	CDS	84864399	84864510	+
GWHAAZE00000004	CDS	84866922	84866948	+
GWHAAZE00000004	CDS	84867043	84867115	+
GWHAAZE00000004	CDS	84867338	84867441	+
GWHAAZE00000004	CDS	84867896	84868107	+
GWHAAZE00000004	CDS	84868190	84868316	+
GWHAAZE00000004	CDS	84870040	84870184	+
GWHAAZE00000004	CDS	84870566	84870660	+
GWHAAZE00000004	CDS	84871032	84871194	+
GWHAAZE00000004	CDS	84871354	84871507	+
GWHAAZE00000004	CDS	84872128	84872310	+

Transcript Sequence
>GWHTAAZE016901 ATGAGGGGTGGCACTGTTCAGATCAATTGGCACGATACCAAACCTGTTCTAGCCCTAGATTTTCACCCCTTTTCTGGGATTCTCGCCACTGCTGGTGCCGATTTTGACATTAAGCTATGGCTAATAAATTCGGGGGAAGTGGAAAAGAAAGTTCCTACAGTTAATTATCAGAATAGCCTTACTTATCATGGATCTGCTGTCAATGCTCTGCGCTTCTCTCCTTCTGGAGAACAACTTGCCTCTGGTGCTGATGGTGGTGAGATGATTATTTGGAAGTTACACACTACTGAGGAGGGTCAAGCATGGAAGGTTCTCAAGACATTATCGTTTCATCGTAAGGATGTGTTGGACGTGCAGTGGTCTAGTGATGGCGCATTTCTCATTTCTGGATCAGTAGATAATTCTTGCATCATATGGGATGTTAACAAAGGCTCAGTCCATCAAATTTTGGATGCTCATTTCCATTATGTTCAAGGTGTAGCATGGGATCCGTTGGCCAAGTATGCCGCTTCACTTAGTTCAGATAGAACTTGCCGGATTTATGTAAACAAGCCTCAGAAAACAAAAGGCATTGAGAAGATTAATTATGTCTGTCAGCATGTCATTACTAGGGTGGAACCACAAAACACAGATGATTCTAAGGAGATTCAGTCTGCTAAAACCCATCTTTTCCATGATGAGACATTGCCATCGTTCTTCCGAAGATTAGCTTGGTCGCCCGATGGATCATTTTTACTTTTGCCGGCAGGTATGAGCCTACAGAGTACTAGGTCTTACAAAATCTCTCCGACTTCCGAACCAGTGAATACCGCTTATGTTCTTTCAAGAAAAGATCTTTCAAGGCAAGATATTACTCAAGTTTCTCTTAGACAACTCATAATAACTAATTCTTTAATTTTAGTGGCATTATCCTTGCCTGCTTTACTGCTCCCTGGTGCCAGCAAACCTGTTGTAGCAGTGCGCTTCTGTCCTATGGCCTTTAGCCTGCGTGGATCGAGCTCATGTACTACCCATGTTTCTTTGACTCATGCAGCTGCGTTTTTCAAGCTTCCCTATCGGCTTATTTTTGCTGTCGCCACTTTGAACTCTTTATACATCTACGACACGCAGAGCATTCAACCAATAGCAATCTTAGCTGGACTTCACTATGCAGCCGTTACTGATATTTCATGGTCCCCTACTGGTAAATATGTAGCACTGTCCTCCCAAGATGGTTACTGTACTCTTGTAGAATTCGAAAATGATGAATTAGGACCTCCTGTTTCTTTCTCAGGTTCACGTTTATTCCCTAGCTTGTCTTGGTACATTCTTTTGCCAAATATCATGAACCTGGAGGACACAAAGAGGAGTGAGGACACTACAAACAAAAACGACATTGTTGATGTAGAAAGCTTAAAAGCAGAAGCCGAAACAAATGAAGTGAAACAAATGCCACCAAGTTTGATCACTAGTACTCCAGCCCCGAACAAGCCTGCAAAGAGGCGTATAACTCCAATGGCCATAGATTGA

Network for GWHGAAZE016881

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	11	40	0.079
PF00400.33	WD40	57	91	0.0066
PF00400.33	WD40	102	140	1.80E-07
PF00400.33	WD40	148	181	0.033

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.928
	SRR3591706	second leaf	3.756
	SRR3591707	mature leaf	1.969
	SRR3591708	Shoot apex	15.397
	SRR3591709	Stem	6.295
	SRR3591710	White floral bud	4.494
	SRR3591711	White flower	6.367
	SRR3591712	Green floral bud	8.449
	SRR3591713	Yellow flower	3.770
SRP173429	SRR8316895	Juvenile bud stage	6.279
	SRR8316896	Juvenile bud stage	8.117
	SRR8316897	Juvenile bud stage	3.272
	SRR8316894	Third green stage	3.295
	SRR8316900	Third green stage	8.213
	SRR8316901	Third green stage	8.083
	SRR8316898	Complete white stage	2.586
	SRR8316899	Complete white stage	10.815
	SRR8316903	Complete white stage	4.467
	SRR8316902	Silver flowering stage	2.227
	SRR8316904	Silver flowering stage	3.291
	SRR8316905	Silver flowering stage	1.014
	SRR8316906	Gold flowering stage	2.501
	SRR8316907	Gold flowering stage	3.991
	SRR8316908	Gold flowering stage	3.707
SRP132670	SRR6706286	Control	6.541
	SRR6706287	Light intensity 50%	8.042
	SRR6706288	Light intensity 20%	9.046
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.401
	CNS0095593	Slightly white alabastrum(diploid) 2	4.348
	CNS0095594	Slightly white alabastrum(diploid) 3	5.086
	CNS0095595	Whole white alabastrum(diploid) 2	5.134
	CNS0095596	Whole white alabastrum(diploid) 3	4.329
	CNS0095597	Whole white alabastrum(diploid) 4	4.763
	CNS0095598	Silvery flower (diploied) 1	5.054
	CNS0095599	Silvery flower (diploied) 2	6.232
	CNS0095600	Silvery flower (diploied) 3	4.358
	CNS0095601	Golden flower (diploid) 1	3.375
	CNS0095602	Golden flower (diploid) 2	3.963
	CNS0095603	Golden flower (diploid) 3	2.893
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.418
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.452
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.679
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.234
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.661
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.888
	CNS0095610	Silvery flower (tetraploid) 1	3.876
	CNS0095611	Silvery flower (tetraploid) 2	3.869
	CNS0095612	Silvery flower (tetraploid) 3	4.226
	CNS0095613	Golden flower (tetraploid) 1	1.312
	CNS0095614	Golden flower (tetraploid) 2	2.738
	CNS0095615	Golden flower (tetraploid) 3	1.765
CRA001975	CRR073297	Stem 1	9.373
	CRR073298	Stem 2	6.488
	CRR073299	Stem 3	9.895
	CRR073300	Leaf 1	7.551
	CRR073301	Leaf 2	6.952
	CRR073302	Leaf 3	5.246
	CRR073303	Juvenile bud 1	8.128
	CRR073304	Juvenile bud 2	6.560
	CRR073305	Juvenile bud 3	7.424
	CRR073306	Third green 1	1.594
	CRR073307	Third green 2	1.398
	CRR073308	Third green 3	1.693
	CRR073309	Second white 1	1.613
	CRR073310	Second white 2	1.447
	CRR073311	Second white 3	0.946
	CRR073312	Silver flowering 1	0.615
	CRR073313	Silver flowering 2	0.334
	CRR073314	Silver flowering 3	1.149
	CRR073315	Gold flowering 1	3.802
	CRR073316	Gold flowering 2	5.873
	CRR073317	Gold flowering 3	1.753
	CRR073318	Tawny withering 1	9.410
	CRR073319	Tawny withering 2	6.277
	CRR073320	Tawny withering 3	11.529