Gene detail

Detail information of GWHGAAZE016891

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269448.1	0	PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Vitis vinifera]
Swissprot	tr\|Q8W117\|SMU1_ARATH	5E-10	Suppressor of mec-8 and unc-52 protein homolog 1
trEMBL	tr\|D7THK7\|D7THK7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30523.3}
TAIR10	AT4G04940.1	0	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	85061935	85076208	+
GWHAAZE00000004	mRNA	85061935	85076208	+
GWHAAZE00000004	exon	85061935	85062151	+
GWHAAZE00000004	exon	85063031	85063058	+
GWHAAZE00000004	exon	85063184	85063284	+
GWHAAZE00000004	exon	85066679	85066882	+
GWHAAZE00000004	exon	85067343	85067586	+
GWHAAZE00000004	exon	85069583	85069758	+
GWHAAZE00000004	exon	85070295	85070377	+
GWHAAZE00000004	exon	85071003	85071075	+
GWHAAZE00000004	exon	85071490	85071555	+
GWHAAZE00000004	exon	85073119	85073161	+
GWHAAZE00000004	exon	85074260	85074399	+
GWHAAZE00000004	exon	85074978	85075190	+
GWHAAZE00000004	exon	85075426	85075510	+
GWHAAZE00000004	exon	85075910	85076208	+
GWHAAZE00000004	five_prime_UTR	85061935	85062025	+
GWHAAZE00000004	CDS	85062026	85062151	+
GWHAAZE00000004	CDS	85063031	85063058	+
GWHAAZE00000004	CDS	85063184	85063284	+
GWHAAZE00000004	CDS	85066679	85066882	+
GWHAAZE00000004	CDS	85067343	85067586	+
GWHAAZE00000004	CDS	85069583	85069758	+
GWHAAZE00000004	CDS	85070295	85070377	+
GWHAAZE00000004	CDS	85071003	85071075	+
GWHAAZE00000004	CDS	85071490	85071555	+
GWHAAZE00000004	CDS	85073119	85073161	+
GWHAAZE00000004	CDS	85074260	85074399	+
GWHAAZE00000004	CDS	85074978	85075190	+
GWHAAZE00000004	CDS	85075426	85075510	+
GWHAAZE00000004	CDS	85075910	85076208	+

Transcript Sequence
>GWHTAAZE016911 TACTCACACATTGTTTGTTTAATTGCAGGAACTGTGGTATACTAGTTAAACCAGTCTCTCTCTATTGATTGATATAGAAGAAGAAGAAAGAATGGGAATATTCCAACCATTCCGAGCAATCGGATATATAACAAGCAGCGTCCCCTTTTCTGTTCAGAGATTGGGCACCGAGACCTTTGTCACCGTCAGTGTTGGCAAGTCATGGCAGATTTACAATTGTGCTAAGCTCAATTTGGTGCTTGTTGGTCCTCAACTGCCAAAGAAGATACGGGCTCTTGCTTCCTATAGGGACTATACTTTTGCAGCATATGGGAATAGTATTGGAATATTTAAGCGTGCTCATCAGGTGGCAACTTGGAACAGCCATAATGCGAAGGTAAACTCGTTGCTTCTATTTGGAGAACACATCCTAAGTGTTGATACCGATGGGAATATCTTCATGTGGGCTTTTAAAGGAATCGATCAGAATCTTGCGCCAATTGGACAAATTTCTCTTGAAGAAAAGTTCAGTCCTAGCTGTATAATGCATCCTGATACTTACCTCAATAAGGTGCTTATTGGGAGTCAAGAAGGTTCACTTCAACTTTGGAACATTAGCACAAAGACAAAAATATTTGAGTTCAAGGGATGGAAATCATCTATATGCTGCTTTGTTTCTTCGCCAGCGCTAGATGTTGTTGCAATTGGGTGTACCGATGGAAAGATTAATGTTCACAATATACTTTATGATGAAGAGATAGTTACTTTTACTCATTCAAGTCGAGGTGCTGTGACTGCCCTATCTTTCAGCACTGATGGACAGCCCCTTTTAGCTTCTGGAGGTTCATCTGGTGTCATAAGCATATGGAATCTTGAGAAGAGGAGGCTTCAGTCCGTCATTAGGGAGGCCCATGATTGCTCTGTAACTTCGCTGCATTTTTTTGCTAATGAGCCTGTTCTAATGAGTGCATCTGCAGATAACTCTGTAAAAATGTGGATTTTTGACACAAGTGATGGGGATCCTCGCCTTCTACGCTTTCGAAGTGGGCATAGTGCTCCACCTCTTTGCATAAGGTTCTATGCAAATGGGAGGCACATTCTATCTGCTGGCCAAGATCGTGCGTTTCGCCTCTTCTCTGTCATCCAGGATCAACAAAGTAGAGAGCTTTCTCAGCGTCATGTATCCAAAAGGGCAAAAAAGCTCAGACTGAAGGAAGAAGAGATAAAATTGAAGCCTGTCATTTCATTTGATGTTGCTGAAATTAGGGAGCGTGATTGGTGCAACGTGGTTACGTGTCATATGGATACTGCACAAGCATATGTATGGAGGCTTCAAAATTTTGTTCTCGGTGAACATATCCTCACCCCATCTCCTGAACATCAAACTCCAATTAGGGCTTGTGCCATCAGTGCATGTGGTAATTTTGCAGTTATAGGGACAGCAGGGGGTTGGATTGAGCGGTTTAATCTTCAATCAGGAATAAGCCGAGGCAGTTACATTGACATGTTAGAAAAAAGAAGCTGCGCCCATGATGGGGAAGTAGTGGGTGTTGTCTGCGATTCAACAAATACGTTGATGATAAGTGCAGGATATAATGGGGATATAAAGGTTTGGGATTTCAAAGGACGTGAGCTAAAATCCAGATGGGATGTAGGTTGTGCAGTGGTTAAGATCGTTTACCACCGTTCCAATGGTCTTCTGGCTACAGTAGCAGATGATTTGGTTATCCGTTTGTATGATGTTGTGGCGCAAAGACTTGTTCGTAAATTTGAGGGTCACGGAGATCGTATTACAGACGCGTGTTTCAGTGAGGATGGGAAATGGCTTTTGTCATCCAGCATGGATGGTACACTTCGTATTTGGGATGTTATCTTAGCAAGACAGATAGATGCTATTGATGTTGATGTTTCTATAACTGCGCTCTCTTTGTCACCCAATATGGATGTTTTAGCAACCACTCATGTTGATCAGAATGGCGTCTACCTTTGGTGA

Network for GWHGAAZE016891

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	218	253	0.043
PF00400.33	WD40	265	295	0.0015
PF00400.33	WD40	548	585	9.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14554	UTP21, WDR36	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.482
	SRR3591706	second leaf	2.541
	SRR3591707	mature leaf	2.931
	SRR3591708	Shoot apex	6.267
	SRR3591709	Stem	3.108
	SRR3591710	White floral bud	1.738
	SRR3591711	White flower	6.152
	SRR3591712	Green floral bud	3.842
	SRR3591713	Yellow flower	2.692
SRP173429	SRR8316895	Juvenile bud stage	4.962
	SRR8316896	Juvenile bud stage	6.468
	SRR8316897	Juvenile bud stage	4.587
	SRR8316894	Third green stage	1.997
	SRR8316900	Third green stage	5.789
	SRR8316901	Third green stage	4.841
	SRR8316898	Complete white stage	0.461
	SRR8316899	Complete white stage	3.354
	SRR8316903	Complete white stage	1.387
	SRR8316902	Silver flowering stage	1.280
	SRR8316904	Silver flowering stage	2.670
	SRR8316905	Silver flowering stage	0.728
	SRR8316906	Gold flowering stage	2.748
	SRR8316907	Gold flowering stage	3.681
	SRR8316908	Gold flowering stage	4.014
SRP132670	SRR6706286	Control	3.706
	SRR6706287	Light intensity 50%	4.243
	SRR6706288	Light intensity 20%	5.095
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.238
	CNS0095593	Slightly white alabastrum(diploid) 2	3.376
	CNS0095594	Slightly white alabastrum(diploid) 3	2.535
	CNS0095595	Whole white alabastrum(diploid) 2	2.487
	CNS0095596	Whole white alabastrum(diploid) 3	2.271
	CNS0095597	Whole white alabastrum(diploid) 4	1.143
	CNS0095598	Silvery flower (diploied) 1	2.758
	CNS0095599	Silvery flower (diploied) 2	3.694
	CNS0095600	Silvery flower (diploied) 3	2.553
	CNS0095601	Golden flower (diploid) 1	1.390
	CNS0095602	Golden flower (diploid) 2	1.360
	CNS0095603	Golden flower (diploid) 3	2.364
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.012
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.392
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.477
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.303
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.170
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.062
	CNS0095610	Silvery flower (tetraploid) 1	4.310
	CNS0095611	Silvery flower (tetraploid) 2	3.905
	CNS0095612	Silvery flower (tetraploid) 3	2.856
	CNS0095613	Golden flower (tetraploid) 1	1.253
	CNS0095614	Golden flower (tetraploid) 2	2.611
	CNS0095615	Golden flower (tetraploid) 3	1.391
CRA001975	CRR073297	Stem 1	4.866
	CRR073298	Stem 2	4.285
	CRR073299	Stem 3	2.507
	CRR073300	Leaf 1	2.606
	CRR073301	Leaf 2	4.187
	CRR073302	Leaf 3	1.697
	CRR073303	Juvenile bud 1	1.509
	CRR073304	Juvenile bud 2	0.727
	CRR073305	Juvenile bud 3	1.636
	CRR073306	Third green 1	0.187
	CRR073307	Third green 2	0.219
	CRR073308	Third green 3	0.281
	CRR073309	Second white 1	0.466
	CRR073310	Second white 2	0.310
	CRR073311	Second white 3	0.533
	CRR073312	Silver flowering 1	0.325
	CRR073313	Silver flowering 2	0.294
	CRR073314	Silver flowering 3	0.412
	CRR073315	Gold flowering 1	1.877
	CRR073316	Gold flowering 2	5.335
	CRR073317	Gold flowering 3	0.754
	CRR073318	Tawny withering 1	1.531
	CRR073319	Tawny withering 2	0.710
	CRR073320	Tawny withering 3	2.855